genome.fa.s16487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016487.1 Corchorus olitorius cultivar O-4 contig16520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109821

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1125	307	3.6	311	79	13	1032	33	14	14	36	1.88
2002--2030	14	2.1	14	100	0	58	17	20	20	41	1.90
8814--9143	178	1.9	178	88	1	509	33	15	15	35	1.89
8814--9183	178	2.1	178	85	2	492	34	14	15	35	1.89
9469--9498	3	10.3	3	92	7	53	30	0	0	70	0.88
22772--22845	30	2.5	30	86	2	96	45	12	17	24	1.82
26979--27020	20	2.1	20	95	0	75	11	19	16	52	1.74
31873--31959	41	2.1	41	100	0	174	36	18	14	29	1.91
31873--31972	41	2.4	41	94	0	155	37	17	15	31	1.90
32446--32499	27	2.0	27	100	0	108	37	18	25	18	1.94
36618--36648	5	6.0	5	96	3	53	22	19	0	58	1.40
38525--39636	334	3.3	328	80	6	1118	34	14	14	36	1.87
44817--44843	13	2.1	13	100	0	54	33	7	14	44	1.73
48884--49003	62	1.9	62	96	0	222	26	24	11	37	1.90
51656--51709	26	2.1	26	100	0	108	29	11	25	33	1.91
52392--52553	47	3.4	47	90	0	243	47	24	9	18	1.78
52721--52789	31	2.3	30	80	14	79	39	10	20	30	1.85
56609--56655	19	2.4	19	85	7	58	55	19	2	23	1.54
58609--58641	10	3.7	9	88	11	50	0	9	0	90	0.44
62186--62302	31	3.7	31	94	2	198	35	27	23	13	1.93
62186--62327	63	2.3	63	86	1	178	35	26	21	16	1.94
62178--62367	31	6.1	31	85	1	148	34	24	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66178--66213	17	2.1	17	100	0	72	66	11	11	11	1.45

Tables:   1

The End!