Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016488.1 Corchorus olitorius cultivar O-4 contig16521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132608
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:194 original size:17 final size:17
Alignment explanation
Indices: 165--202 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
155 AACTACTTAC
165 AAACTAAACAAATAAAT
1 AAACTAAACAAATAAAT
*
182 AAAC-AAACTAAATAATT
1 AAACTAAAC-AAATAAAT
199 AAAC
1 AAAC
203 CCACATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.18
Consensus pattern (17 bp):
AAACTAAACAAATAAAT
Found at i:15249 original size:31 final size:31
Alignment explanation
Indices: 15208--15370 Score: 139
Period size: 31 Copynumber: 5.3 Consensus size: 31
15198 GACGTGGCTT
* *
15208 GCCACATGTACCAAAAAGCAACATATAGCAC
1 GCCACGTGTACCAAAAAGCGACATATAGCAC
*
15239 GCCACGTGTACCAAAAAGCGACATGA-GGCAC
1 GCCACGTGTACCAAAAAGCGACAT-ATAGCAC
* * *
15270 GCCACGTGTACCAAAAAGTGACATGTATCAC
1 GCCACGTGTACCAAAAAGCGACATATAGCAC
* * * * * *
15301 GCCATGTGTACCCAAAAGTGACATGTGGCAT
1 GCCACGTGTACCAAAAAGCGACATATAGCAC
* ** * * * *
15332 GCCATGTGTTTCAAAAAGTGACACATGGCAT
1 GCCACGTGTACCAAAAAGCGACATATAGCAC
15363 GCCACGTG
1 GCCACGTG
15371 CACAAAAGGA
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
31 111 0.99
32 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (31 bp):
GCCACGTGTACCAAAAAGCGACATATAGCAC
Found at i:15310 original size:62 final size:62
Alignment explanation
Indices: 15208--15370 Score: 182
Period size: 62 Copynumber: 2.6 Consensus size: 62
15198 GACGTGGCTT
* **
15208 GCCACATGTACCAAAAAGCAACATATAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
1 GCCACGTGTACCAAAAAGTGACATATAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
* * * * * * *
15270 GCCACGTGTACCAAAAAGTGACATGTATCACGCCATGTGTACCCAAAAGTGACATGTGGCAT
1 GCCACGTGTACCAAAAAGTGACATATAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
* ** * * *
15332 GCCATGTGTTTCAAAAAGTGACACATGGCATGCCACGTG
1 GCCACGTGTACCAAAAAGTGACATATAGCACGCCACGTG
15371 CACAAAAGGA
Statistics
Matches: 82, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (62 bp):
GCCACGTGTACCAAAAAGTGACATATAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
Found at i:16612 original size:48 final size:48
Alignment explanation
Indices: 16541--16640 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
16531 ACACTCATTG
16541 TGGTACACCTGTTTATACCTAAAATGTCCA-AGCAAAGAACACCATTAA
1 TGGTACACCTGTTTATACCTAAAATGT-CATAGCAAAGAACACCATTAA
* *
16589 TGGTACACCTGTTTATACCTAAAATGTCATGGCAAAGGACACCATTAA
1 TGGTACACCTGTTTATACCTAAAATGTCATAGCAAAGAACACCATTAA
16637 TGGT
1 TGGT
16641 GAAAGAAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.04
48 47 0.96
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (48 bp):
TGGTACACCTGTTTATACCTAAAATGTCATAGCAAAGAACACCATTAA
Found at i:17207 original size:28 final size:29
Alignment explanation
Indices: 17174--17229 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
17164 GCCCCTTTAC
* *
17174 AATTTTG-ACGTTTTGCCTCATAAACTTT
1 AATTTTGTACATTTTACCTCATAAACTTT
17202 AATTTTGTACATTTTACCTCATAAACTT
1 AATTTTGTACATTTTACCTCATAAACTT
17230 GCAATTTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (29 bp):
AATTTTGTACATTTTACCTCATAAACTTT
Found at i:17447 original size:22 final size:22
Alignment explanation
Indices: 17422--17464 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17412 ATTGCAGTTC
*
17422 AAGGGG-CAAAAGGTTTAAAATT
1 AAGGGGACAAAACG-TTAAAATT
17444 AAGGGGACAAAACGTTAAAAT
1 AAGGGGACAAAACGTTAAAAT
17465 CATTCAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.49, C:0.07, G:0.26, T:0.19
Consensus pattern (22 bp):
AAGGGGACAAAACGTTAAAATT
Found at i:22760 original size:11 final size:11
Alignment explanation
Indices: 22746--22780 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22736 TTTTCTGTTT
*
22746 TTTTATTTTTG
1 TTTTGTTTTTG
*
22757 TTTTGTTTTCG
1 TTTTGTTTTTG
22768 TTTTGTTTTTG
1 TTTTGTTTTTG
22779 TT
1 TT
22781 GCGCTATCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.80
Consensus pattern (11 bp):
TTTTGTTTTTG
Found at i:36164 original size:121 final size:127
Alignment explanation
Indices: 36008--36257 Score: 368
Period size: 121 Copynumber: 2.0 Consensus size: 127
35998 CATTGTTTAA
* * *
36008 ACTTTTATAGTTTCACTCAATTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-T
1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATATAATATCCTTATACT
*
36070 A-ATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATAT-T-AGAATTTTTTAAATAT
66 ATATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAATAT
* *
36129 ACTTTTACAGTTTTATTCAACTAAAAACTCTATTTTTATTTAATTAAATATAATATCCTTATACC
1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATATAATATCCTTATA-C
36194 TATTTTATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAAT
65 TA---TATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAAT
36258 TTATTTCTTA
Statistics
Matches: 113, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
121 51 0.45
122 3 0.03
123 2 0.02
125 2 0.02
129 40 0.35
130 1 0.01
131 14 0.12
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (127 bp):
ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATATAATATCCTTATACT
ATATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTTTTTAAATAT
Found at i:37448 original size:94 final size:92
Alignment explanation
Indices: 37335--37521 Score: 347
Period size: 94 Copynumber: 2.0 Consensus size: 92
37325 TCATATATAC
37335 TGTGTATTTCCCTTTTTCTTTTCTAATGAAAACTAAGCTTTATAAATGCTTGTTTTTTTTTTGCT
1 TGTGTATTTCCCTTTTTCTTTTCTAATGAAAACTAAGCTTTATAAATGCTTG-TTTTTTTTTGCT
37400 ACATTTATTTTTTTTTATCTCATCCGGTA
65 ACATTTA-TTTTTTTTATCTCATCCGGTA
37429 TGTGTATTTCCCTTTTTCTTTTCTAATGAAAACTAAGCTTTATAAATGCTTGTTTTTTTTTGCTA
1 TGTGTATTTCCCTTTTTCTTTTCTAATGAAAACTAAGCTTTATAAATGCTTGTTTTTTTTTGCTA
*
37494 TATTTATTTTTTTTATCTCATCCGGTA
66 CATTTATTTTTTTTATCTCATCCGGTA
37521 T
1 T
37522 CCAGGGTAAA
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
92 22 0.24
93 18 0.20
94 52 0.57
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.56
Consensus pattern (92 bp):
TGTGTATTTCCCTTTTTCTTTTCTAATGAAAACTAAGCTTTATAAATGCTTGTTTTTTTTTGCTA
CATTTATTTTTTTTATCTCATCCGGTA
Found at i:42062 original size:14 final size:14
Alignment explanation
Indices: 42043--42069 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42033 CTTTTAATAC
42043 TACTAGGTATTAAA
1 TACTAGGTATTAAA
42057 TACTAGGTATTAA
1 TACTAGGTATTAA
42070 TAATAAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
TACTAGGTATTAAA
Found at i:47284 original size:111 final size:111
Alignment explanation
Indices: 47090--47313 Score: 448
Period size: 111 Copynumber: 2.0 Consensus size: 111
47080 TACATTGAGG
47090 TTCATTGTTTCTGGGCACTTTAGAAAGAATTAGGTTGAAGCACATAAATTAAGTCCTTTCAATAT
1 TTCATTGTTTCTGGGCACTTTAGAAAGAATTAGGTTGAAGCACATAAATTAAGTCCTTTCAATAT
47155 CTACACCCACAGTCAATACTGTCTTTCTCTGCATATGTGTTTATGT
66 CTACACCCACAGTCAATACTGTCTTTCTCTGCATATGTGTTTATGT
47201 TTCATTGTTTCTGGGCACTTTAGAAAGAATTAGGTTGAAGCACATAAATTAAGTCCTTTCAATAT
1 TTCATTGTTTCTGGGCACTTTAGAAAGAATTAGGTTGAAGCACATAAATTAAGTCCTTTCAATAT
47266 CTACACCCACAGTCAATACTGTCTTTCTCTGCATATGTGTTTATGT
66 CTACACCCACAGTCAATACTGTCTTTCTCTGCATATGTGTTTATGT
47312 TT
1 TT
47314 TATAAACTTG
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (111 bp):
TTCATTGTTTCTGGGCACTTTAGAAAGAATTAGGTTGAAGCACATAAATTAAGTCCTTTCAATAT
CTACACCCACAGTCAATACTGTCTTTCTCTGCATATGTGTTTATGT
Found at i:61355 original size:1 final size:1
Alignment explanation
Indices: 61349--61377 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
61339 ACACCAAGGA
61349 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
61378 AATGAAAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:64780 original size:331 final size:329
Alignment explanation
Indices: 61668--67694 Score: 6780
Period size: 331 Copynumber: 18.3 Consensus size: 329
61658 TTATAATTCA
* * * *
61668 TGTTTCGAATTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCG-AGACGTGAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAG-CGTGAAAA
* ** ** * * * * *
61732 ATTCTTCAATCTTACTGGCACTAAATTATATACTTTTTAGGACTAATGTGGCCAAAAATTGAGGA
65 ATTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGA
* * * * **
61797 AATATTTTATGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGCTG
130 AA-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * * * * *
61862 GCTAAAAACACGTTCAGAGACACCGGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCCTTGAA
194 GCTAAAAACGCGTTCCG-GGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* **
61927 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTATTTTTACGAGGTTC
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
61992 TGAATCT
323 TGAATCT
* *
61999 TGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAATACGATATTCGAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * *
62064 CTCTTCAA-TTTTTTGGCATTAAATTATATTTTTTTTATGAGTGTTGTGGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * * *
62128 AATTTTTTTGATCTGTTTTGGCAAAATTTTAACCGAAATCGTGTACTAACTATCACTGTTTTTGG
131 AA-TTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
62193 CTAAAAACGCGTTCGGGGCCTCGGCACAATTTTGCATGATTTTTAGCACCAAGACTCCTTGAAAT
195 CTAAAAACGCGTTCCGGGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAAT
* *
62258 ATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAACTAAGGATTTGTTTTTACGAACATCTG
260 ATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTG
*
62323 AATCA
325 AATCT
* * * * * *
62328 TGTTTCGATTTAATTGGATATTAATTTTGAGAAAATAGGAAAAACGATATTCGAAACGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* ** * * * * * *
62393 TTCTTCAATCTTACTGGCATTAAATTACATACTTTTTAGGACTATTGTGGCCAAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * * * **
62458 ATATTTTCTGGTCAGTTTTTG-AAAATTTTAGCCGAAATCGTGTA-TAACCATCA-TGTTTGCAG
131 A-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTT-TTG
* * * * * * * *
62520 GCTAAAAACGTGTTCCGGGATCTCGGCTCAGTTTTGCATGATTTTTGGCACCAACACTCTTTGAA
194 GCTAAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* * * *
62585 ATATTTATATTCATCTAACCAAATCGCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
*
62650 TGAATCA
323 TGAATCT
* * * * ** *
62657 TATTTCGTTTTAATTAGATATTAATTC-GAAAGAAATAAAAAAAATAATATTAGAAGCGTGAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAA-AAATAAGAAAAACGATATTCGAAGCGTGAAAA
* * * ** **
62721 GA-TCTTTAATCTTTTTAGCGTTAAATTATATA-TTTTTATGAGTATTGTAACTAAAAATTGAGG
65 -ATTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGG
*** ** * * * ** *
62784 AAAAAACTTT--TC-G--GGT-C-AATTTTTAGCC-AAA--ATATACTAAAAATCACTGTTTTTG
129 AAAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * ** *
62839 GCTGAAAACGCGTTCCGGGCCCCGGCTA-AAATTTGCATGATTTTTGGCGGCAAGGGTCCTTTAA
194 GCTAAAAACGCGTTCCGGGCCCCGGC-ACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* * * * * * **
62903 ATATCAATATTCATCTAATCAAATTTCAGCGACATTGG-ATTGAAGGATTTATTTCAACGAGCAT
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATT-AAGGATTTGTTTTTACGAGCAT
62967 CTGAATCT
322 CTGAATCT
* * *
62975 TGTTTCGATTTAATTACAAATTAATTCAGAAAAAAATAAGAAAAATGATATTCGAAGCGTGAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTG-AAAAAATAAGAAAAACGATATTCGAAGCGTGAAAA
* * * *
63040 ACTCTTCAATTTTTTTTTTGCGTTAAGA-TATGTATTTTATTATGAGTGTTGTGGCCGAAAATTG
65 ATTCTTCAA--TTTTTTTGGCGTTAA-ATTATATATTTT-TTATGAGTATTGTGGCCGAAAATTG
* * * * * * *
63104 AGGAAAAATTTATTAATAT-ATTTTGCAAAATTTTATCCGAAATCGTATACTAACCATCATGGTT
126 AGG-AAAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTT
* * * * *
63168 TTTAGCTAAAAATGCGTTCCGGGGCTCCGACACAATTTTGCATGATTTTTGGTGCCAAGACTCCT
190 TTTGGCTAAAAACGCGTTCC-GGGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCT
* * * *
63233 TGAAATATCTATATTCATCTAACTAAATTTCAGCCAAATAGGAATTAAGGATTTGTTTTTGCGAG
254 TGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAG
63298 CATCTGAATCT
319 CATCTGAATCT
* *
63309 TGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTCAAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* *
63374 CTCTTCAATTTTTTTGGCGTTAAATTATAT-TTTTTTATGAGTGTTGTGGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * *
63438 ACA-TTTTTGATCTATTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATTACGGTTTTTGG
131 A-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * * *
63502 CTAAAAATGCATTTCGAGGTCCCGGCACAATTTTGCATGATTTTTGGTGCCAAGACTCCATGAAA
195 CTAAAAACGCGTTCCG-GGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* *
63567 TATCTATATTTATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTGCGAGCATCT
259 TATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCT
63632 GAATCT
324 GAATCT
*
63638 TGTTTCGATTTAATTAGAAATTAATT-T------A-AA-AAAAACGATATTCGAAGCGTAAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * *
63694 TTGTTCAATTTTATTGGCGTTAAATTATATATTTTTTATGAGTGTTGTAGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGG-A
* *
63759 AAATTTTTTGATCTATTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTGG
130 AAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
63824 CTAAAAACGTGTTCTGGTGCCCCGACACAATTTTGCATGATTTTTGGTGCCAAGACTCCCTTGAA
195 CTAAAAACGCGTTCCGG-GCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACT-CCTTGAA
* * * *
63889 ATATCGATATTCATCTAACCAAATCTCAACAAAATTGGAATTAAGGATTTGTTTTTACAAGCATC
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
*
63954 TGAATCA
323 TGAATCT
* *
63961 TGTTTCGATTTAATTGGATATTAATTCTGAAAAAAT-AGAAAAAACGATATTCGAAGCGTGAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAG-AAAAACGATATTCGAAGCGTGAAAA
* * * * * *
64025 ATTCTTCAATCTTTCTGGCATTAAATTATATACTTTTTA-GAACTATTGTGGCCAAAAATTGAGG
65 ATTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATG-AGTATTGTGGCCGAAAATTGAGG
* * * * *
64089 AAAATTTTATGGTCAT-TTTTTGTAAAATTTTAGCTGAAATCGTGTACTAACCATCACGATTTTT
129 AAAATTTTTTGATC-TGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * * *
64153 GGCAAAAAACGCTTTTCGGGACCCCGGCACAGTTTTGCAAGATTTTTGGCGCCAACACTCCTTGA
193 GGCTAAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
* * *
64218 AATATCTATATTCATCTAACCAAATCTCAGCCAAAGTGGAATTAAGGATTTATTTTTACGATCAT
257 AATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCAT
64283 CTGAAT-T
322 CTGAATCT
* * *
64290 ATGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGGA-ATTTGAAGAGTGAAA
1 -TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAAC-GATATTCGAAGCGTGAAA
* ** * * *
64354 AACTCTTC-A-TTAATTGGCGTTAAAGTATA-ATTTTTTATGAGTGTTGTGGCCGAAAATTAAGG
64 AATTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGG
* * * * * * *
64416 AAAATTTTTTTAATCTATTTTTGCAGAATTTTAACCGAAATCGTGCACTAACCAACACAGTTTTT
129 AAAA-TTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTT
* * **
64481 TGGCTAAAAACGCGTTCCGGAGCCCCGACACAATTTTGCATGATTTTTGGTGCCAAGACTTTTTG
192 TGGCTAAAAACGCGTTCCGG-GCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTG
* *
64546 AAATATTTACATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCA
256 AAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCA
64611 TCTGAATCT
321 TCTGAATCT
* *
64620 TGTTTCGATTTAGTTAGAAATTAATTCAG-AAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * *
64684 CTCTTCAATTTTTTTAGCGTTAAATTATATATTTTTTATGAGTGTTGTGGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * * * *
64749 AATTATTTTGATCTGTTTTTGCAATATTTTAACTGAAATCATATACTAACCATCACGGTTTTTGG
131 AATT-TTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
64814 CAAAAAACGCGTTCCGAGGCCGCGGCACAATTTTGGTATGATTTTTGGTGCCAAGACTCCTTGAA
195 CTAAAAACGCGTTCCG-GGCCCCGGCACAATTTT-GCATGATTTTTGGCGCCAAGACTCCTTGAA
* * *
64879 ATATCTACATTCATCTAACCATATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTGCGAGCATC
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
64944 TGAATCT
323 TGAATCT
* * *
64951 TATTTCGATTTAGTTAGAAATTAATTCTGAAAAAAATAAGAAAAACGATATTCGAAGCGTGGAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTG-AAAAAATAAGAAAAACGATATTCGAAGCGTGAAAA
* * * *
65016 ACTCTTCAATTTTTTTGGCGTTAAATTATATATGTTTTATGAGTGTTGTGGCCGAAAACTGAGGG
65 ATTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGA-GG
* * * * *
65081 AAATTTTTTTGATCTGTTTTTGCAATATTTTAACTGAAATCGTATACTAACCATCACGGTTTTTG
129 AAAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * *
65146 GCAAAAAACGCATTCCGAGGCCCCGACACAATTTTTGCATGATTTTTGGTGCCAAGACTCCTTGA
194 GCTAAAAACGCGTTCCG-GGCCCCGGCACAA-TTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
* ** *
65211 AATATTTATATTCATCTAACCAAATCTCAGCCAAATTAAAATTAAGGATTTGTTTTTGCGAGCAT
257 AATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCAT
65276 CTGAATCT
322 CTGAATCT
* *
65284 TGTTTCGATTTAATTAGAAATAAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTAAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * * *
65349 TTGTTCAATTTTATTGGTGTTAAATTATATATTTTTTATGAGTGTTGTAGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * *
65414 AATTTTTTTGATCTATTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCATGGTTTTTGG
131 AA-TTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
65479 CTAAAAACGCGTTCTGGTGCCCCGACACAATTTTGCATGGTTTTTGGTGCCAAGACTCCTTGAAA
195 CTAAAAACGCGTTCCGG-GCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* * *
65544 TATCTATATTCATCTAACCAAATCTCAACAAAATTGGAATTAAGGATTTGTTTAGAATCAACGAG
259 TATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTT----T-TACGAG
*
65609 CATCTGAATCA
319 CATCTGAATCT
* * * * *
65620 TGTTTCGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTTGAAACGTG-AAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * * * * * * ** *
65684 TTCATCAATCTTATGGGCATTAAAATATATACTTTTTAGGACAATTGTGGCCAAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * * * * ** *
65749 ATATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTCTACTAATAATCACGGTTGTTGG
131 A-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * * *
65814 CTAAAAAGGCGTTCCGGGACCCCGGCTCAGTTTTGTATGATTTTTGGCACCAACACT-CTTCGAA
195 CTAAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAA
* * *
65878 ATATCTATATTCATCTAACCAAATCGCAGCCACAA-TGGATTTAAAGATTTGTTTTTACGAGCAT
258 ATATCTATATTCATCTAACCAAATCTCAGCCA-AATTGGAATTAAGGATTTGTTTTTACGAGCAT
*
65942 CTGAATCA
322 CTGAATCT
* * * * * * * *
65950 TATTTTGATTTAATTAGATATTAATTCGGAAGAAATAAGAAAAACAATATTAGAAGCGTGAAAAG
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * * ** ** **
66015 CTCTTTAATCTTTTTAGCGTTAAATTATATA-TTTTTATGAGTATTGTAACTAAAAATTGAAAAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTG-AGGA
*** ** * * * **
66079 AAAAACTTT--TC-G--GGT-C-AATTTTTAGCCAAAATCGTTTACTAACCATCACGGTTGCTGG
130 AAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * ** * *
66137 CTAAAAACGCGTTCCGGGACCCCGGCTCAGTTTTGCATGATTTTTGGAACCAATACCCCTTGAAA
195 CTAAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* *
66202 AATCTATATTCATTTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCT
259 TATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCT
*
66267 GAATCA
324 GAATCT
* * *
66273 TGTTTCGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
** * ** * * ** * * * *
66338 TTCCACAA-TGTTACGAGCATTAAATTCTATACCTTTTAGGACTATTGTGGCC-AAAAATGCAGA
66 TTCTTCAATTTTTTTG-GCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTG-AGG
* ** * * * * * * **
66401 AAACATTTTATCTTCAGTTTTTGTAAAATTTTGGCCGAAATTGTATACTAACCATCACAGTTGCT
129 AAA-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
* * * * ** * * * *
66466 GGCTAAAAACGCGTTCTTGGACACCGTCTTAGTTTTGCATGATTTTTGACACCAATACTCCTTGA
193 GGCTAAAAACGCGTTC-CGGGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
* * * ** *
66531 AATACCTTTACTCATCTAACCAAATCTCAGCCAAATTAAAATTAAGGATTTGTTTTTGCGAGCAT
257 AATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCAT
66596 CTGAATCT
322 CTGAATCT
* *
66604 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAATGATATTCGAAGCGTAAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * * *
66669 TTGTTCAATTTTATTGGTGTTAAATTATATATTTTTTATGAGTGTTGTAGCCGAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGG-A
* *
66734 AAATTTTTTGATCTATTTTTGCAAAATTTTAACCGAAATCGTGTACTAACCATCACGGTTTTTGG
130 AAATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * *
66799 CTAAAAACGCGTTCTGGTGCCCCGACACAATTTTGCATGGTTTTTGGTGCCAAGACTCCTTGAAA
195 CTAAAAACGCGTTCCGG-GCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAA
* * *
66864 TATCTATATTCATCTAACCAAATCTCAACAAAATTGGAATTATGGATTTGTTTTTACGAGCATCT
259 TATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCT
66929 GAATCAT
324 GAATC-T
* * * *
66936 T-TTTCGATTTAATTGGATATTAATTCTGAAAAAGTAGGAAAAACGATATTCGAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* ** * * * * * *
67000 TTCTTCAATCTTACTGGCATTAAATTATATACTTCTTAGGACTATTGTGGCCAAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * ** * * * *
67065 ATATTTTCTGGTAAGTTTTTGTAAAATTTTAGTCGAAATCGCGTACTAACCATCACGATTTTTGG
131 A-ATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * * *
67130 -TAAAAAACGCTTTTCGGGACCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCCTCGAA
195 CT-AAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAA
* * ***
67194 ATATCTCTATTCATCTAACCAGATCTCAAAAAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
258 ATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATC
*
67259 TGAATCA
323 TGAATCT
* * * * * *
67266 TGTTTTGATTTATTTGGATATTAATTCTGAAATAATAGGAAAAACGATATTCGAAGCGTGAAAAA
1 TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
* * * * * * * **
67331 TTATTCAATCTTTCTGGCATTAAATTATATACTTTTTAGGACTATTGTGGCAAAAAATTGAGGAA
66 TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
* * * * * *
67396 ATATTTTATGGTCAT-TTTATGTAAAATTTTAGCCGAAATCGTGTACTTTACCATCACGATTTTT
131 A-ATTTTTTGATC-TGTTTTTGCAAAATTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTT
* * * * * * *
67460 GGCAAAAAACGCTTTTCGGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAACACTCCTTGA
193 GGCTAAAAACGCGTTCCGGG-CCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGA
*
67525 ATTATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCAT
257 AATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCAT
*
67590 CTAAAT-T
322 CTGAATCT
* *
67597 ATGTTTCGATTTAATTAGAAATTAATTCAGACAAAATAAGAAAAA-GAATATTCGAAGCGTGAAA
1 -TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACG-ATATTCGAAGCGTGAAA
*
67661 AATTCTTC-A-TTTTTTGGCGTAAAATTATAT-TTTT
64 AATTCTTCAATTTTTTTGGCGTTAAATTATATATTTT
67695 AATCTGTTTT
Statistics
Matches: 4888, Mismatches: 691, Indels: 236
0.84 0.12 0.04
Matches are distributed among these distances:
317 2 0.00
318 117 0.02
319 61 0.01
320 62 0.01
321 63 0.01
322 121 0.02
323 357 0.07
324 28 0.01
325 3 0.00
326 3 0.00
327 43 0.01
328 165 0.03
329 753 0.15
330 495 0.10
331 1360 0.28
332 466 0.10
333 375 0.08
334 139 0.03
335 205 0.04
336 70 0.01
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (329 bp):
TGTTTCGATTTAATTAGAAATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAA
TTCTTCAATTTTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGGCCGAAAATTGAGGAA
AATTTTTTGATCTGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
TAAAAACGCGTTCCGGGCCCCGGCACAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATA
TCTATATTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGA
ATCT
Found at i:67942 original size:290 final size:292
Alignment explanation
Indices: 67420--67986 Score: 802
Period size: 290 Copynumber: 1.9 Consensus size: 292
67410 TTTTATGTAA
* ** * * *
67420 AATTTTAGCCGAAATCGTGTACTTTACCATCACGATTTTTGGCAAAAAACGCTTTTCGGGACCCC
1 AATTTTAACCGAAATCGTGTACTAAACCAACACGATTTTTGGCAAAAAACGCGTTCCGGGACCCC
* * * * * *
67485 GGCTCAGTTTTGCATGATTTTTTGCGCCAACACTCCTTGAATTATCTATATTCATCTAACCAAAT
66 GACACAATTTTGCATGATTTTTGGCGCCAACACTCCTTGAAATATCTACATTCATCTAACCAAAT
*
67550 CTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTAAATTATGTTTCGATTTAATTAG
131 CTCAGCCAAATTGGAATTAAGGATTTGATTTTACGAGCATCTAAATTATGTTTCGATTTAATTAG
* * *
67615 AAATTAATTCAGACAAAATAAGAAAAAGAATATTCGAAGCGTGAAAAATTCTTC-ATTTTTTGGC
196 AAATTAATTCAGAAAAAATAAGAAAAAGAAAATTCGAAGCGTGAAAAATTCTTCAATTTTTCGGC
*
67679 GTAAAATTATAT-TTTTAATCTGTTTTTGCAG
261 ATAAAATTATATATTTTAATCTGTTTTTGCAG
* *
67710 AATTTTAACCGAAATCGTGTAC-AAACCAACATGATTTTTTGGCTAAAAACGCGTTCC-GGAGCC
1 AATTTTAACCGAAATCGTGTACTAAACCAACACGA-TTTTTGGCAAAAAACGCGTTCCGGGA-CC
* * * * *
67773 CCGACACAATTTTGCTTGATTTTTGGTGTCAAGACTCCTTGAAATATTTACATTCATCTAACCAA
64 CCGACACAATTTTGCATGATTTTTGGCGCCAACACTCCTTGAAATATCTACATTCATCTAACCAA
* * * *
67838 ATCTCAGCCAAATTGGAATTAAGGATTTGATTTTGCGAGCATCTGAATCT-TGTTTCTATTTAGT
129 ATCTCAGCCAAATTGGAATTAAGGATTTGATTTTACGAGCATCTAAAT-TATGTTTCGATTTAAT
*
67902 TAGAAGTTAATTCAGAAAAAATAAGAAAAAGAAAATTCGAAGCGTGAAAAATTCTTCAATTTTTC
193 TAGAAATTAATTCAGAAAAAATAAGAAAAAGAAAATTCGAAGCGTGAAAAATTCTTCAATTTTTC
*
67967 GGCATTAAATTATATATTTT
258 GGCATAAAATTATATATTTT
67987 TTTATGAGTG
Statistics
Matches: 242, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
289 11 0.05
290 207 0.86
291 20 0.08
292 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35
Consensus pattern (292 bp):
AATTTTAACCGAAATCGTGTACTAAACCAACACGATTTTTGGCAAAAAACGCGTTCCGGGACCCC
GACACAATTTTGCATGATTTTTGGCGCCAACACTCCTTGAAATATCTACATTCATCTAACCAAAT
CTCAGCCAAATTGGAATTAAGGATTTGATTTTACGAGCATCTAAATTATGTTTCGATTTAATTAG
AAATTAATTCAGAAAAAATAAGAAAAAGAAAATTCGAAGCGTGAAAAATTCTTCAATTTTTCGGC
ATAAAATTATATATTTTAATCTGTTTTTGCAG
Found at i:68334 original size:331 final size:330
Alignment explanation
Indices: 67700--69378 Score: 1844
Period size: 331 Copynumber: 5.1 Consensus size: 330
67690 TTTTTAATCT
* * * * * * * *
67700 GTTTTTGCAGAATTTTAACCGAAATCGTGTACAAACCAACATGATTTTTTGGCTAAAAACGCGTT
1 GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACG-GTTGTTGGCTAAAAACGCGTT
* * * * *
67765 CCGGAGCCCCGACACAA-TTTTGCTTGATTTTTGGTGTCAAGACTCCTTGAAATATTTACATTCA
65 CCGG-GCCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCA
* * *
67829 TCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGATTTTGCGAGCATCTGAATCTTGTTTC
129 TCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTC
* * * * * *
67894 TATTTAGTTAGA-AGTTAATTCAGAAAAAATAAGAAAAA-GAAAATTCGAAGCGTGAAAAATTCT
194 GATTTAATTGGATA-TTAATTCTGAAAAAATAGGAAAAACG-ATATTCGAAGCGTGAAAAATTCT
* * * *
67957 TCAATTTT-TCGGCATTAAATTATATATTTTTTTATGAGTGTTGTGGCCAAAAATTGAGGAAA-A
257 TCAATTTTATCGGCATTAAATTATATA-CTTTTTAGGACTATTGTGGCCAAAAATTGAGGAAATA
* *
68020 TTTTTTGATA
321 TTTTCTGGTA
* * * * * * *
68030 TGTTTTT-TCAATATTTTAACCGAAATCATATACTAACCATCACAGTTTTTGGCAAAAAACGCGT
1 -GTTTTTGT-AAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGTTGGCTAAAAACGCGT
* * *
68094 TCCGAGGCCCCGACACAATTTTTGCACGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTC
64 TCCG-GGCCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTC
*
68159 ATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTAT
128 ATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTT
* *
68224 CGATTTAGTTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCCT
193 CGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCTT
* * *
68289 CAATTTTATGGGCATTAAAATATATACTTTTTAGGACTATTGTGGCCGAAAATTGAGGAAATATT
258 CAATTTTATCGGCATTAAATTATATACTTTTTAGGACTATTGTGGCCAAAAATTGAGGAAATATT
68354 TTCTGGTCA
323 TTCTGGT-A
* * * ** * *
68363 GTTTTTGTAAAATTATAGCCGAAATCGTCTACAAATAATCATGGTTGTTGGCTAAAAACGCATTC
1 GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGTTGGCTAAAAACGCGTTC
* * * * *
68428 CGCGACCCCGGC-TAAGTTTTGCATGATTTTTGGCGCCAACACT-CTTCGAAATTTCTATATTCA
66 CG-GGCCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAAATATCTATATTCA
* * * *
68491 TCTAACCAAATCGCAGCCACAA-TGGATTTAAAGATTTGTTTTTACGAGCATCTGAATCATATTT
129 TCTAACCAAATCTCAGCCA-AATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTT
* * * * * * * **
68555 TGATTTAATTAGATATTAATTCAGAAGAAATAAGAAAAACAATATTAGAAGCGTGAAAAGCTCTT
193 CGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCTT
* ** * * * * * ** * *
68620 TAATCTTT-TTAGCGTTGAATTATATA-TTTTTATGAGTATTTTAACTAAAAATT-ATGGAAAAA
258 CAAT-TTTATCGGCATTAAATTATATACTTTTTAGGACTATTGTGGCCAAAAATTGA-GG-AAAT
68682 ACTTTTC--G--
320 A-TTTTCTGGTA
* * * *
68690 G-----GTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGGTTGCTGGCTAAAAACGCGTTA
1 GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGTTGGCTAAAAACGCGTTC
* * ** * *
68750 CGGGACCCCGACTC-AGTTTTGTATGATTTTTGGAACCAATACCCCTTGGAAA-ATCTATATTCA
66 CGGG-CCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAAATATCTATATTCA
* *
68813 TTTAACAAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTC
129 TCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTC
* **
68878 GATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAACGTGAAAAATTCCAC
194 GATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCTTC
* * * * * *
68943 AATGTTA-CGAGCATTAAATTCTATACCTTTTAGGACTATTGAGGCCAAAAA-TGCAGAAAACAT
259 AATTTTATCG-GCATTAAATTATATACTTTTTAGGACTATTGTGGCCAAAAATTG-AGGAAATAT
*
69006 TTTATGGTCA
322 TTTCTGGT-A
* *
69016 GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGCTGGCAAAAAACGCGTTC
1 GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGTTGGCTAAAAACGCGTTC
* * * * * * * * * *
69081 ATGGACACCGGCTC-AGTTTTGCATGATTTTTGACACCAATACTCCTTGAAATACCTTTATTCAT
66 -CGGGCCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCAT
* * *
69145 CTAACCAAATCTCAGCTAAATTGGAATTATGGATTTGTTTTTACGAGCATCTGAATCATTTTTCG
130 CTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCG
* *
69210 ATTTAATTGGATATTAATTCTGAAAAAGTAGGAAAAACGATATTCGAAACGTGAAAAATTCTTCA
195 ATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCTTCA
* * * * *
69275 ATCTTACCGGCATTAAATTATATACTTCTTAGTACTATTGTGGCCAAAAGTTGAGGAAATATTTT
260 ATTTTATCGGCATTAAATTATATACTTTTTAGGACTATTGTGGCCAAAAATTGAGGAAATATTTT
69340 CTGGTAA
325 CTGGT-A
69347 GTTTTTGTAAAATTTTAGCCGAAATCGTGTAC
1 GTTTTTGTAAAATTTTAGCCGAAATCGTGTAC
69379 GTTTCGGGAC
Statistics
Matches: 1133, Mismatches: 177, Indels: 76
0.82 0.13 0.05
Matches are distributed among these distances:
321 9 0.01
322 218 0.19
323 26 0.02
324 1 0.00
326 1 0.00
327 1 0.00
329 1 0.00
330 64 0.06
331 709 0.63
332 101 0.09
333 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (330 bp):
GTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGTTGGCTAAAAACGCGTTC
CGGGCCCCGACACAAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATC
TAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGA
TTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAATTCTTCAA
TTTTATCGGCATTAAATTATATACTTTTTAGGACTATTGTGGCCAAAAATTGAGGAAATATTTTC
TGGTA
Found at i:69993 original size:331 final size:331
Alignment explanation
Indices: 69378--74878 Score: 5616
Period size: 331 Copynumber: 16.8 Consensus size: 331
69368 AAATCGTGTA
* * * *
69378 CGTTTCGGGACCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAACACTCCTTGAAATATCTCTAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* *
69443 TCATCTAACCAAATCTCAACAAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * * *
69508 TTCGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGTGTGAAAAATTC
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
** * **** * * * * *
69573 CACAATGTTACAAGCATTAAATTCTATACCTTTTAGGACTATTGTGGCCAAAAA-TGCAGAAAAC
196 TTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTG-AGGAAAT
* * **
69637 ATTTTATGGTCAGTTTTTATAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTGCTGGCT
260 ATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
69702 AAAAACG
325 AAAAACG
* * * * * * * *
69709 CGTTCCTGGACACCGGCTCAACTTTGCATGATTTTTGACACCAATACTCCTTGAAATACCTTTAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* * * *
69774 TCATCTAACCAAATCTCAGCTAAATTGGAATTATGGATTTGTTTTTACGAGCATCTGAATTATTT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * * * * * * *
69839 TTCGATTTAATTGGATATTAATTCTGAAAAAGTAGGGAAAACGATATTTGAAGCGTGGAAAATTT
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
** * * *
69904 TTCAATCTTACTGGCATTAAATTATACACTTCTTAGGACTATTGTGGCCAAAAATTGAGGAAATA
196 TTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAATA
* * * ** * *
69969 TTTTCTGGTAAGTTTTTGTAAAATTTTACCCGAAATCGTCTACTAATAATCACTGTTGTTGGCTA
261 TTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTA
*
70034 AAAACT
326 AAAACG
* * * *
70040 CGTTCCGGGACCCCGGCTCAGTTTTACATGATTTTTGGTGCCAACACT-CTTCGAAATATCTATA
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAAATATCTATA
* * * * *
70104 TTCATCTAACCAAATCGCAGCCACAA-TGGATTTAAAGATTTGTTTTTACTAACATCTGAATCAT
65 TTCATCTAACCAAATCTCAGCCA-AATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCAT
* * * * * *
70168 ATTTCGATTTAATTAGATATTAATTCGGAAGAAATAAGAAAAACAATATTAGAAGCGTGAAAAGC
129 GTTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAAC
* * * * * ** *
70233 TCTTTAATCTTTTTAGCGTTAAATTATATA-TTTTTATGAGTATTCTATCTAAAAATTGAGGAAA
194 TCTTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAA
* ** * **
70297 AAACTT-T--TC-G----TGT-CAATATTTAGCCGAAATCGTGTACTAACCATCACGGTTGCTGG
259 TATTTTCTGGTCAGTTTTTGTAAAAT-TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
70353 CTAAAAACG
323 CTAAAAACG
* * * * * *
70362 TGTTCCGAGA-CCCAGCTCAATTTTGCATGATTTTTGGCACCAATACTCCTTGAAAAATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* *
70426 TCATCTATCCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATTATGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * ** * *
70491 TTCGATTTAATTGGATATTAATTCT-AAAAAATAGGAAACGCGATATTCGAAGCGTG-AACATTC
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
*** ** * * * *
70554 CAAAATC-TTACGAGCATTAAATTATATACCTTTTT-GGTCTATTGTGGCCAAAAATTCAGAAAA
196 TTCAATCTTTTTG-GCATTAAATTATATA-CTTTTTATGACTATTGTGGCCAAAAATTGAGGAAA
* * * *
70617 TATTTTCTTGTCAGTTTTTGTAAAATTTTAGCCGAAAT--TGT-GT-ACCATCACGGTTTCTGAC
259 TATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
70678 TAAAAACG
324 TAAAAACG
* * * * * **
70686 CGTTTCGGGTCCCCGGCTTAGTTTTGCATGATTTTTGGCACCAATTCTCCTTGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* * * * * *
70751 TAATCTAACCAAATCTCAGCCAAATTGTAATTAAATG-TTTCTTTTTACGAGCAACTTAATCATG
66 TCATCTAACCAAATCTCAGCCAAATTGGAATT-AAGGATTTGTTTTTACGAGCATCTGAATCATG
* * * *
70815 TTTCGATTTAATTTGATATTAATTCTGAAAAAATAGGAAAAACTATATTCGAAGCGTGAAAAATT
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACT
** * * * * *
70880 CTTCAATCTTACTGGCATTAATTTATATACATTTTAGGACTATTGTGGACAAAAATTAAGGAAAT
195 CTTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAAT
* * *
70945 ATTTTCTGGTCAGTTTTTGTAAAATTTTCGCCGAAATCGTGTATTAACCATCACGGTTTCTGGCT
260 ATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
71010 AAAAACG
325 AAAAACG
* * * * * * *
71017 GGTTCCGCGACCCCGCCTCAGTTTTGCATGATTTTTGGCACCAATACTCCTTGAAATATATATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
*
71082 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACTAGCATCTGAATCATGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * * * * *
71147 TTCAATTTAATTAGAAATTACTTCAGAAAAAAATAAGAAAAACGATATTTGAAGAGTGAAAAACT
131 TTCGATTTAATTAGATATTAATTCTG-AAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACT
* * ** * * * * *
71212 CTTC-ATTTTTTTGGCTTTAAATTATATTTTTTTTATGAGTGTAGTGGCCGAAAATTGATG-AAT
195 CTTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAAT
* * * * * * * * *
71275 AATTTTTTGATCTGTCTTTGCAGACTTTTAACCGAAAATCGTGTACTATAACCATCACGGTTTTA
260 -ATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCG-AAATCGTGTAC--TAACCATCACGGTTTTT
71340 GGCTAAAAACG
321 GGCTAAAAACG
* * * * * * *
71351 CGTTCCGGGGCCCCGGCACAATTTTGCTTGATTTTTTGTGCCAAGA-TTCTCGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* * *
71415 TCATCTAACTAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTAAGGAGCATCTGAATC-TGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATG-
* * * *
71479 TTTCGATTTAATTAGAAATTAATTCAG-AAAAATAAGAAAAACGATATTTGAAGAGTGAAAAACT
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACT
* * * * * *
71543 CTTC-ATTTTTTTGTCATTAAATTATAT-TTTTTTATGAGTGTTGTGGCCGAAAATTGAGGAAAT
195 CTTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAAT
* * * * * *
71606 -TTTT-TGATCTGTTTTTGCAAAATTTTAACCGAAATCGTCTACTAACCATCACGATTTTTGGCT
260 ATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
71669 AAAAACG
325 AAAAACG
* * * *
71676 CGTTTCGGGGCCCTC-GCACAATTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATA
1 CGTTCCGGGACCC-CGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATA
* * * *
71740 TTCATCAAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTAAGGAGCATCTTAATC-TG
65 TTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATG
* * *
71804 TTTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATACTC-AATGCGTGAAAAA
130 -TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAA-GCGTGAAAAA
* * * * * * **
71868 CTCATAAATTTTTTTGGCGTTAAATTATACATTTTTTTATGAGCT-TTGTGGCTGAAAATTGAGG
193 CTCTTCAATCTTTTTGGCATTAAATTATATA-CTTTTTATGA-CTATTGTGGCCAAAAATTGAGG
* * ** * * *
71932 AAA-ATTTTTTTGATTTGTTTTTGCAAAATTTTAACCGAAATCGTATACTAACCATCACGGTTTT
256 AAATA-TTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT
71996 TGGCTAAAAACG
320 TGGCTAAAAACG
* * * * * *
72008 CGTTCCGGGGCCCCGACACAATTTTGCATG-TTTTTTGTGCCAAGACTCCCTGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
**
72072 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTTACGAAAATCTGAATCATG
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTG-TTTTTACGAGCATCTGAATCATG
* * * *
72137 TTTCGATTTAATTGGATATTGATTCTGAAAAAATAAGAAAAACGCTATTCGAAGCATG-AAAACA
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAAC-
* ** * * *
72201 TCTACAATCTTACTGGCATTAAATTATATACTTTTTA-GCACTATTTTGGCAAAAAAATGAGGAA
194 TCTTCAATCTTTTTGGCATTAAATTATATACTTTTTATG-ACTATTGTGGCCAAAAATTGAGGAA
* * ** *
72265 GTATTTTCTAGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAATAATCACGGTTGTTGG
258 ATATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
72330 CTAAAAACG
323 CTAAAAACG
* * * * *
72339 TGTTTCGGGACCCCGGCTCAGTTTTGCATGATTTTTGGCGCCAACACT-CTTCGAAATATCTAAA
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAAATATCTATA
* * * * * * *
72403 TTCATTTAACCAAATCCCAGCCACATTGGATTTAA-AATTTGTTTTTACGAGCTTCTGAATCATA
65 TTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATG
* * * * * *
72467 TTTCGATTTAATTAGATATTAATTCGGAAGAATTAAGAAAAACAATATTAGAAGCGTGAAAAGCT
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACT
* * * * * * * ** * *
72532 CTTTAATATTTTTAGCGTTGAATTATATA-TTTGTATGATTATTGTAACTAAAAATTGAGGAAAA
195 CTTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAAT
* * * **
72596 ACTTTTC--G---G-----GTCAATTTTTAGCCGAAATCGTGTACTATCCATCACGGTTGCTGGC
260 A-TTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
72651 TAAAAACG
324 TAAAAACG
* * * * * *
72659 CATTCCGGGACCCCGACTCAGTTTTGCATAATTTTTGGCGCCAAGACTCCTTTAAATATCAATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* ** * * * *
72724 TCATCTAACAAAATCTCAGCCACTTTGGATTTAAGGATTTCTTTTTACGAGCATATGAATCTTGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * * * * *
72789 TTCGATTTGATTAGAAATTAATTCAGAAAAAATGAGAAAAAAGATATTCGAACCGTGAAAAACTC
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
* * * *
72854 TTCAATCTTTTTGGCGTT-AATATATATACTTTTTATG-CGTTTTGTGGCTAGAAATTGAGGACA
196 TTCAATCTTTTTGGCATTAAAT-TATATACTTTTTATGAC-TATTGTGGCCAAAAATTGAGGA-A
* * * * * * *
72917 A-AATTT-T--TC-G----GGTCAATTTTTAGCTGAAA---TATAATAACCATCACGGTTTTTGG
258 ATATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* *
72970 CTGATAACG
323 CTAAAAACG
*** * * * * * * *
72979 CGTTCCGGGGTTCTGGCTCAATTTAGCAAGATTTTTGGCGCCAAGTCTCCTTTAAATTTCAATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* * * * * * * *
73044 TCATCTAATCAAATGTCATCCACATTGG-ATTGAAGGATTTGTTATAACGAGCATATGAATCTTG
66 TCATCTAACCAAATCTCAGCCAAATTGGAATT-AAGGATTTGTTTTTACGAGCATCTGAATCATG
* * * * *
73108 TTTCGATTTAATTAGAAATTAATTCAGTAAAAATAAGAAAAACGATATTCGACGTGTGAAAAACT
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACT
* * * * * *
73173 CTTCAATTTTTTTGGCGTTAAATTATATATTTTTTTATGAGTGTTGTGGCCGAAAATTGAGGAAA
195 CTTCAATCTTTTTGGCATTAAATTATATA-CTTTTTATGACTATTGTGGCCAAAAATTGAGGAAA
* * * * * * * * * *
73238 AATTTTGTGATCTGTTTTTGCAAAATTTAAACCGAAATCGTG----GA-CGTCACGGTTTTTGGT
259 TATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
73298 TAAAAACG
324 TAAAAACG
** * * * * *
73306 CGTTCCGGGGTCCCGGCACAATTTTGCATGATTTTTGGTGTCAAAACTCCTTGAAATAACTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* ** * * *
73371 TCATCTGACCAAATCTCAGAAAAATTGGAATTAAGGATTTGTTTTTACGATCATCTCAATCATAT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* ** *
73436 TTCGATTTAATTGGATATTAATTCTGAAAAAATAAGAAAAACGATATTTTAAGAGTGAAAAACTC
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
* * * * * * *
73501 TTCATTTTTTTTGGCATTAAATTATGT--TTTTATATGAGTGTTGTTG--AGGAAA---A--AAA
196 TTCAATCTTTTTGGCATTAAATTATATACTTTT-TATGACTATTGTGGCCA-AAAATTGAGGAAA
** * * * * * *
73557 -A-TTT-TAATCTGTTTTTGCAAAATTTTAACCGAAATCGTCTACCAACCATCACGGTTTTTTGC
259 TATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
73619 TAAAAACG
324 TAAAAACG
* * * * *
73627 CGTTCCGGG-GCCCGGCACAAGTTTGCATGATTTTTGGTGCCAAGATTCCTTGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* * * * *
73691 TCATCTAACTAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTAAGGAGTATCTTAATC-TGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATG-
* *
73755 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATAAGAAAAACGATATT--AATTGCGTGAAAAA
130 TTTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAA--GCGTGAAAAA
* * * * * * * * *
73818 CTCTTAAATTTTTTTGTCGTTAAATAATA-ATTTTATTTATGAGTGTTGTGGCCGAAAATTGAGG
193 CTCTTCAATCTTTTTGGCATTAAATTATATA-CTT-TTTATGACTATTGTGGCCAAAAATTGAGG
* * * * * * **
73882 AAAAATTTTTTGATCTGTTTTTGCAAAATTTTAACCGAAATAATGTACTAACCATCACGGTTTTT
256 AAATATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
73947 GGCTAAAAACG
321 GGCTAAAAACG
* * * * *
73958 CGTTCCGGGTCCCCGACACAATTTTGCATGATTTTTGGTGTCAAGACTCCTTGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
*
74023 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGAATCTGAATCATGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * *
74088 TTCGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAGCGATATTCGAAGCGTG-AAAACAT
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAAC-T
* **
74152 CTACAATCTTACTGGCATTAAATTATATACTTTTTA-GCACTATTGTGGCCAAAAATTGAGGAAA
195 CTTCAATCTTTTTGGCATTAAATTATATACTTTTTATG-ACTATTGTGGCCAAAAATTGAGGAAA
* **
74216 TATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTGCTGGC
259 TATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
74281 TAAAAACG
324 TAAAAACG
* * * * * *
74289 CGTTCCGGGATCTCGACTCAGTTTTGCATGATTTTTGGCGTCAACACTCCTTGAAATATCTATAT
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
* *
74354 TCATTTAACCAAATCTCAGCTAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
66 TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
* * *
74419 TTCGATTTAATTGGATATTAATTCTGAAAAAATAGGAAAAACGATATTCGAAGCGTGAAAAA-TT
131 TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
** * * * *
74483 TATCAATCTTACTGGCATTAAATTATATACTTTTTAGGAATATTGTGGCCAAAATTTGAAGAAAT
196 T-TCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAAT
* * ** *
74548 ATTTTCTGGTCAATTTTTGTAAAATTTTAACCGAAATCGTGTACTAATAATCACGGTTGTTGGCT
260 ATTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCT
74613 AAAAACG
325 AAAAACG
* * * * *
74620 CGTTCCGGAACCCCGGCTCAGTTTTGCATGATTTTTCGCGCCAACACT-CTTCGAATTATCTATA
1 CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTT-GAAATATCTATA
* * * * * * *
74684 TTCATCTAACCAAATCGCAGTCACATTGGATTTAA-AATTTGTTTTTACGAGCTTCTGAATCATA
65 TTCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATG
* * * * * * *
74748 TTTCAATTTAATTATATATTAATTCGGAAGAAATTAAAAAAAAAACAATATTAGAAGCGTGAAAA
130 TTTCGATTTAATTAGATATTAATTCTGAA-AAA--ATAAGAAAAACGATATTCGAAGCGTGAAAA
* * * * * ** *
74813 GCTCTTTAATCTTTTTAG-AGTTGAATTATATA-TTTTTATGAGTATTGTAACTAAAAATTGAGG
192 ACTCTTCAATCTTTTTGGCA-TTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGG
74876 AAA
256 AAA
74879 AAACTTTTCG
Statistics
Matches: 4379, Mismatches: 664, Indels: 253
0.83 0.13 0.05
Matches are distributed among these distances:
316 32 0.01
317 3 0.00
318 5 0.00
319 28 0.01
320 577 0.13
321 298 0.07
322 97 0.02
323 26 0.01
324 40 0.01
325 209 0.05
326 148 0.03
327 328 0.07
328 69 0.02
329 49 0.01
330 260 0.06
331 1501 0.34
332 495 0.11
333 149 0.03
334 65 0.01
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (331 bp):
CGTTCCGGGACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATAT
TCATCTAACCAAATCTCAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCATGT
TTCGATTTAATTAGATATTAATTCTGAAAAAATAAGAAAAACGATATTCGAAGCGTGAAAAACTC
TTCAATCTTTTTGGCATTAAATTATATACTTTTTATGACTATTGTGGCCAAAAATTGAGGAAATA
TTTTCTGGTCAGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTA
AAAACG
Found at i:82000 original size:32 final size:32
Alignment explanation
Indices: 81959--82022 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
81949 TTTATTTGTC
*
81959 GATACCATAGAAGACAATTGGTTGAGACCATA
1 GATACCATAGAAGACAATTGATTGAGACCATA
* *
81991 GATATCATAGAAGACAGTTGATTGAGACCATA
1 GATACCATAGAAGACAATTGATTGAGACCATA
82023 AATGACGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (32 bp):
GATACCATAGAAGACAATTGATTGAGACCATA
Found at i:83900 original size:21 final size:21
Alignment explanation
Indices: 83839--83900 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
83829 GTGGATTTAG
*
83839 CATCCTTCTCTTCTAACTTCC
1 CATCCTTCTCTTCTAACTTTC
83860 CATCCTTCTCTTCTAACTTTC
1 CATCCTTCTCTTCTAACTTTC
83881 CATCCTTCTCTTCTAACTTT
1 CATCCTTCTCTTCTAACTTT
83901 TGAACGGGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.15, C:0.39, G:0.00, T:0.47
Consensus pattern (21 bp):
CATCCTTCTCTTCTAACTTTC
Found at i:89039 original size:3 final size:3
Alignment explanation
Indices: 89031--89082 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
89021 TTATGCTTTG
89031 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
89079 TTA T
1 TTA T
89083 ATATGAGGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:90700 original size:1 final size:1
Alignment explanation
Indices: 90694--90719 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
90684 AGAGAAATTT
90694 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
90720 CCTTGGCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:94696 original size:79 final size:79
Alignment explanation
Indices: 94562--94740 Score: 295
Period size: 79 Copynumber: 2.3 Consensus size: 79
94552 AACAAACAAT
* * * *
94562 GGATAAACTTGAAGGTTATAGATGAGTATAGAACAAGATTTTACCCCCAATGTTGCCATTATTCA
1 GGATAAAATTCAAGGTTATAGATGAGTATAGAACAAGATTTTACCCCCAACGTTGCCATCATTCA
*
94627 GATTTATATTCGCA
66 GATTTATATTCACA
94641 GGATAAAATTCAAGGTTATAGATGAGTATAGAACAAGATTTTACCCCCAACGTTGCCATCATTCA
1 GGATAAAATTCAAGGTTATAGATGAGTATAGAACAAGATTTTACCCCCAACGTTGCCATCATTCA
*
94706 GATTTATATTCATA
66 GATTTATATTCACA
*
94720 GGAGAAAATTCAAGGTTATAG
1 GGATAAAATTCAAGGTTATAG
94741 CCTCACACCA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 93 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (79 bp):
GGATAAAATTCAAGGTTATAGATGAGTATAGAACAAGATTTTACCCCCAACGTTGCCATCATTCA
GATTTATATTCACA
Found at i:99805 original size:13 final size:13
Alignment explanation
Indices: 99787--99818 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
99777 ATTTAAAAGA
99787 AATTTTCTAATTT
1 AATTTTCTAATTT
99800 AATTTTCTAATTT
1 AATTTTCTAATTT
99813 AATTTT
1 AATTTT
99819 ATCTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (13 bp):
AATTTTCTAATTT
Found at i:116632 original size:25 final size:24
Alignment explanation
Indices: 116581--116637 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
116571 GTCAGTCTTG
*
116581 AATTT-TTTAATGTTTAATTCTTA
1 AATTTATTTAATGTTTAATTATTA
*
116604 AATTTATTTAATGTCTTAATTATTC
1 AATTTATTTAATGT-TTAATTATTA
116629 AATTTATTT
1 AATTTATTT
116638 TACAATCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 5 0.17
24 8 0.27
25 17 0.57
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (24 bp):
AATTTATTTAATGTTTAATTATTA
Found at i:125858 original size:22 final size:22
Alignment explanation
Indices: 125789--126153 Score: 105
Period size: 22 Copynumber: 16.6 Consensus size: 22
125779 TAACCTTCTT
*
125789 ATGAAATTTTGTTAACCTCCCTA
1 ATGAAATTTTGATAACCTCCC-A
* * *
125812 A-GGAATTTTGA-AGACCTCACT
1 ATGAAATTTTGATA-ACCTCCCA
*
125833 ATGAAATTTTGATAACTTCCCA
1 ATGAAATTTTGATAACCTCCCA
*
125855 ATGAAATTTTGATAACCAAACCAACA
1 ATGAAATTTTGATAACC--TCC--CA
* *
125881 CTATGAGATGTTGATAACCT-CCA
1 --ATGAAATTTTGATAACCTCCCA
* * * ***
125904 TATGATATATTGATAACCACATT
1 -ATGAAATTTTGATAACCTCCCA
* * *
125927 ATGAAAATTTAAAAACCT-CCA
1 ATGAAATTTTGATAACCTCCCA
* * *
125948 TATG-AATTGTT-AGTAA-TTACACT
1 -ATGAAATT-TTGA-TAACCT-CCCA
* * * * *
125971 CTGAAATTTTGATAATCACACT
1 ATGAAATTTTGATAACCTCCCA
* * * *
125993 ATAAAATTGTGATAACCTCACT
1 ATGAAATTTTGATAACCTCCCA
* *
126015 ATGAAATTTTGATAAACCTTCCT
1 ATGAAATTTTGAT-AACCTCCCA
* *
126038 ATAAAATTTTGATAAACCTCCCT
1 ATGAAATTTTGAT-AACCTCCCA
* * **
126061 ATAAAATTTTGATAACATCCTT
1 ATGAAATTTTGATAACCTCCCA
*
126083 ATGAAATCTTGATAA-CT----
1 ATGAAATTTTGATAACCTCCCA
* *
126100 A-CAAATTTTGATAACCT-TCA
1 ATGAAATTTTGATAACCTCCCA
*
126120 TATGAAATTTTGATATCCTCCC-
1 -ATGAAATTTTGATAACCTCCCA
126142 -TGAAATTTTGAT
1 ATGAAATTTTGAT
126154 TACTCCATAA
Statistics
Matches: 259, Mismatches: 57, Indels: 55
0.70 0.15 0.15
Matches are distributed among these distances:
16 11 0.04
17 3 0.01
20 12 0.05
21 9 0.03
22 152 0.59
23 52 0.20
24 2 0.01
25 1 0.00
26 2 0.01
28 15 0.06
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (22 bp):
ATGAAATTTTGATAACCTCCCA
Found at i:126039 original size:23 final size:23
Alignment explanation
Indices: 125991--126075 Score: 120
Period size: 23 Copynumber: 3.7 Consensus size: 23
125981 GATAATCACA
*
125991 CTATAAAATTGTGAT-AACC-TC
1 CTATAAAATTTTGATAAACCTTC
*
126012 ACTATGAAATTTTGATAAACCTTC
1 -CTATAAAATTTTGATAAACCTTC
*
126036 CTATAAAATTTTGATAAACCTCC
1 CTATAAAATTTTGATAAACCTTC
126059 CTATAAAATTTTGATAA
1 CTATAAAATTTTGATAA
126076 CATCCTTATG
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
22 13 0.23
23 42 0.74
24 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.36
Consensus pattern (23 bp):
CTATAAAATTTTGATAAACCTTC
Found at i:126284 original size:22 final size:22
Alignment explanation
Indices: 126259--126404 Score: 118
Period size: 22 Copynumber: 6.6 Consensus size: 22
126249 AATTACATTT
*
126259 TGAAAATTTGATAACCTCTTTA
1 TGAAATTTTGATAACCTCTTTA
*
126281 TGAAATTTTGATAACCTCTCTA
1 TGAAATTTTGATAACCTCTTTA
* * * * * *
126303 TAAAATTATGTTGACCCCTCTA
1 TGAAATTTTGATAACCTCTTTA
* * *
126325 TGAAATTTTGATAATCACATTA
1 TGAAATTTTGATAACCTCTTTA
* *
126347 TGTAATTTTGATAACCTCGCTT-
1 TGAAATTTTGATAACCTC-TTTA
*
126369 TGAAATTTTGATAACAATAC--TA
1 TGAAATTTTGATAAC-CT-CTTTA
126391 TGAAATTTTGATAA
1 TGAAATTTTGATAA
126405 TCTTCCTACA
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
21 1 0.01
22 94 0.95
23 3 0.03
24 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (22 bp):
TGAAATTTTGATAACCTCTTTA
Found at i:126373 original size:44 final size:44
Alignment explanation
Indices: 126237--126427 Score: 144
Period size: 44 Copynumber: 4.4 Consensus size: 44
126227 AATACCACTA
* * * * *
126237 TGAAATTTTGGTAATTACAT-TTTGAAAATTTGATAACCTCTTT
1 TGAAATTTTGATAATCACATCTATGAAATTTTGATAACCTCCTT
* * * * * *
126280 ATGAAATTTTGATAACCTC-TCTATAAAATTATGTTGACC-CCTCT
1 -TGAAATTTTGATAATCACATCTATGAAATTTTGATAACCTCCT-T
*
126324 ATGAAATTTTGATAATCACAT-TATGTAATTTTGATAACCTCGCTT
1 -TGAAATTTTGATAATCACATCTATGAAATTTTGATAACCTC-CTT
*
126369 TGAAATTTTGATAA-CA-ATACTATGAAATTTTGATAATCTTCC-T
1 TGAAATTTTGATAATCACAT-CTATGAAATTTTGATAA-CCTCCTT
**
126412 ACAAATTTTGATAATC
1 TGAAATTTTGATAATC
126428 CGATCTCTAT
Statistics
Matches: 116, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
42 2 0.02
43 18 0.16
44 88 0.76
45 6 0.05
46 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.42
Consensus pattern (44 bp):
TGAAATTTTGATAATCACATCTATGAAATTTTGATAACCTCCTT
Found at i:126375 original size:66 final size:66
Alignment explanation
Indices: 126259--126406 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 66
126249 AATTACATTT
* * * * * * * **
126259 TGAAAATTTGATAACCTCTTTATGAAATTTTGATAACCTCTCTATAAAATTATGTTGACCCCT-C
1 TGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCGCTATAAAATTATGAT-AACAATAC
126323 TA
65 TA
* * * *
126325 TGAAATTTTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAATACT
1 TGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCGCTATAAAATTATGATAACAATACT
126390 A
66 A
126391 TGAAATTTTGATAATC
1 TGAAATTTTGATAATC
126407 TTCCTACAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
65 3 0.04
66 65 0.96
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (66 bp):
TGAAATTTTGATAATCACATTATGAAATTTTGATAACCTCGCTATAAAATTATGATAACAATACT
A
Found at i:126397 original size:88 final size:88
Alignment explanation
Indices: 126234--126397 Score: 215
Period size: 88 Copynumber: 1.9 Consensus size: 88
126224 AGAAATACCA
* * * * *
126234 CTATGAAATTTTGGTAATTACATTTTGAAAATTTGATAACCTCTTTATGAAATTTTGATAACCTC
1 CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTCCTTATGAAATTTTGATAACATC
*
126299 TCTATAAAATTATGTTGACCCCT
66 ACTATAAAATTATGTTGACCCCT
* *
126322 CTATGAAATTTTGATAATCACATTATGTAATTTTGATAACCTCGCTT-TGAAATTTTGATAACAA
1 CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTC-CTTATGAAATTTTGATAAC-A
*
126386 T-ACTATGAAATT
64 TCACTATAAAATT
126398 TTGATAATCT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
88 62 0.95
89 3 0.05
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.41
Consensus pattern (88 bp):
CTATGAAATTTTGATAATCACATTATGAAAATTTGATAACCTCCTTATGAAATTTTGATAACATC
ACTATAAAATTATGTTGACCCCT
Found at i:126460 original size:22 final size:21
Alignment explanation
Indices: 126432--126473 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
126422 ATAATCCGAT
126432 CTCTATGAAATCTCGATAATCA
1 CTCTATGAAATCT-GATAATCA
*
126454 CTCTATGAGATCTGATAATC
1 CTCTATGAAATCTGATAATC
126474 TTCTATATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (21 bp):
CTCTATGAAATCTGATAATCA
Found at i:126542 original size:22 final size:21
Alignment explanation
Indices: 126513--126631 Score: 89
Period size: 22 Copynumber: 5.4 Consensus size: 21
126503 AAATTGAGAC
*
126513 TTTTATAACCTTCATATGAAA
1 TTTTATAACCTACATATGAAA
126534 TTTTGATAACC-ACACTATGAAA
1 TTTT-ATAACCTACA-TATGAAA
* **
126556 TTTTGATAACCTCCCCATGAAA
1 TTTT-ATAACCTACATATGAAA
* * *
126578 TATTAGTAACCTCCTTATGAAA
1 TTTTA-TAACCTACATATGAAA
*
126600 TTTTGTTAACC-ACACTATGAAA
1 TTTT-ATAACCTACA-TATGAAA
126622 TTCTTATAAC
1 TT-TTATAAC
126632 GTCGCTATGC
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.10
22 68 0.86
23 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (21 bp):
TTTTATAACCTACATATGAAA
Found at i:126576 original size:44 final size:43
Alignment explanation
Indices: 126513--126871 Score: 174
Period size: 44 Copynumber: 8.3 Consensus size: 43
126503 AAATTGAGAC
* * *
126513 TTTT-ATAACCTTCATATGAAATTTTGATAACCACACTATGAAA
1 TTTTGATAACCTCCCTATGAAATTTTGATAACCTC-CTATGAAA
* *
126556 TTTTGATAACCTCCCCATGAAATATT-AGTAACCTCCTTATGAAA
1 TTTTGATAACCTCCCTATGAAATTTTGA-TAACCTCC-TATGAAA
* * * *
126600 TTTTGTTAACCACACTATGAAATTCTT-ATAACGTCGCTATGCCTATGACA
1 TTTTGATAACCTCCCTATGAAATT-TTGATAA---C-C--T-CCTATGAAA
* * *
126650 TGTTGATAA--T--C--T---A-TTTGATAACCT-TTATATAAA
1 TTTTGATAACCTCCCTATGAAATTTTGATAACCTCCTAT-GAAA
* * ** *
126683 TTTGTGATAACCACACTATGAAATTTCAATAACCTTCCTAAGAAA
1 TTT-TGATAACCTCCCTATGAAATTTTGATAACC-TCCTATGAAA
* * *
126728 TTTTAATAACCTGATCCTATGAAATTTTGATAACCTTCCCATGAAA
1 TTTTGATAACCT--CCCTATGAAATTTTGATAACC-TCCTATGAAA
* * * * *
126774 -TTTGATAACTTCCATATGAAATTTTGGTAACCACACTGTGAAA
1 TTTTGATAACCTCCCTATGAAATTTTGATAACCTC-CTATGAAA
* * *
126817 TTTTGATAACCT-CCTCATGAAATTATAATAACCATCTTATGAAA
1 TTTTGATAACCTCCCT-ATGAAATTTTGATAACC-TCCTATGAAA
126861 TTTTGATAACC
1 TTTTGATAACC
126872 ACACAGAGAC
Statistics
Matches: 236, Mismatches: 48, Indels: 63
0.68 0.14 0.18
Matches are distributed among these distances:
32 3 0.01
33 4 0.02
34 7 0.03
36 1 0.00
37 1 0.00
38 1 0.00
39 2 0.01
40 6 0.03
41 1 0.00
42 1 0.00
43 33 0.14
44 109 0.46
45 20 0.08
46 29 0.12
47 1 0.00
48 1 0.00
50 14 0.06
51 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (43 bp):
TTTTGATAACCTCCCTATGAAATTTTGATAACCTCCTATGAAA
Found at i:126714 original size:22 final size:21
Alignment explanation
Indices: 126680--126873 Score: 147
Period size: 22 Copynumber: 8.8 Consensus size: 21
126670 ACCTTTATAT
126680 AAATTTGTGATAACCACACTATG
1 AAATTT-TGATAACCAC-CTATG
** * *
126703 AAATTTCAATAACCTTCCTAAG
1 AAATTTTGATAACC-ACCTATG
*
126725 AAATTTTAATAACCTGATCCTATG
1 AAATTTTGATAACC--A-CCTATG
* *
126749 AAATTTTGATAACCTTCCCATG
1 AAATTTTGATAACC-ACCTATG
**
126771 AAA-TTTGATAACTTCCATATG
1 AAATTTTGATAACCACC-TATG
* *
126792 AAATTTTGGTAACCACACTGTG
1 AAATTTTGATAACCAC-CTATG
*
126814 AAATTTTGATAACCTCCTCATG
1 AAATTTTGATAACCACCT-ATG
* * *
126836 AAATTATAATAACCATCTTATG
1 AAATTTTGATAACCA-CCTATG
126858 AAATTTTGATAACCAC
1 AAATTTTGATAACCAC
126874 ACAGAGACAA
Statistics
Matches: 136, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
20 3 0.02
21 18 0.13
22 87 0.64
23 10 0.07
24 18 0.13
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.35
Consensus pattern (21 bp):
AAATTTTGATAACCACCTATG
Found at i:126816 original size:111 final size:109
Alignment explanation
Indices: 126662--126871 Score: 282
Period size: 111 Copynumber: 1.9 Consensus size: 109
126652 TTGATAATCT
*
126662 ATTTGATAACCTTTATATAAATTTGTGATAACCACACTATGAAATTTCAATAACCTTCCT-AAGA
1 ATTTGATAACCTTCATATAAATTTGTGATAACCACACTATGAAATTTCAATAACC-TCCTCAAGA
*
126726 AATTTTAATAACCTGATCCTATGAAATTTTGATAACCTTCCCATGAA
65 AATTATAATAACC--ATCCTATGAAATTTTGATAACCTTCCCATGAA
* * ** *
126773 ATTTGATAA-CTTCCATATGAAATTT-TGGTAACCACACTGTGAAATTTTGATAACCTCCTCATG
1 ATTTGATAACCTT-CATAT-AAATTTGTGATAACCACACTATGAAATTTCAATAACCTCCTCAAG
*
126836 AAATTATAATAACCATCTTATGAAATTTTGATAACC
64 AAATTATAATAACCATCCTATGAAATTTTGATAACC
126872 ACACAGAGAC
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
109 21 0.24
110 7 0.08
111 54 0.61
112 6 0.07
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (109 bp):
ATTTGATAACCTTCATATAAATTTGTGATAACCACACTATGAAATTTCAATAACCTCCTCAAGAA
ATTATAATAACCATCCTATGAAATTTTGATAACCTTCCCATGAA
Found at i:128017 original size:27 final size:26
Alignment explanation
Indices: 127962--128023 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
127952 TCTAAATTTC
127962 TATTATTTTAATAATGGAATAATTAAAA
1 TATTA-TTTAATAATGGAAT-ATTAAAA
127990 TATTATTTAATAATGGCAAT-TTAGAAA
1 TATTATTTAATAATGG-AATATTA-AAA
128017 TA-TATTT
1 TATTATTT
128024 GAAACAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 8 0.25
27 16 0.50
28 8 0.25
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (26 bp):
TATTATTTAATAATGGAATATTAAAA
Found at i:129362 original size:332 final size:323
Alignment explanation
Indices: 128707--129614 Score: 1007
Period size: 332 Copynumber: 2.8 Consensus size: 323
128697 TACATCGTCG
** * * *
128707 AACCAAATCTCAGGAACATTGGATTTACGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
1 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGAT
* * * *
128772 TTAATTAGAAATTAATTCGGAATAAAATGGAAAAACAATATTAGAAGTGTGAAAAAACCCTTCAA
66 TTAATTAGAAATAAATTCAGAA-AAAATGGAAAAACGATATTAGAAGCGTG-AAAAACCCTTCAA
** * * * *
128837 TTTTTGTTGTTGTTAAATTATATATTTTTTCTGATTATTGAGGCAAAAAATTGA-GAAAAACATT
129 TTTTT-TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGGAAAAACATT
* * * ** * *
128901 TCGTGTCAGTTTTAGTCGAAATAGTGTACTAACCATCACTTTTTTTTTTTTTGCTAAAAACGCGT
193 TCGTGTCAATTTTAGACGAAATAGTGTACTAACCATAAC--TGGTTTTTTTGGCTAAAAACACGT
* * * * * *
128966 TTCGGGGCACCGACTCAGTTTTGCAAGATTTTTGGCAGACAGATTCCTTGAAATATCTATATTCA
256 TCCGGGCCACCGACTCAATTATGCAAGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCA
*
129031 TCT
321 TCA
* *
129034 AGCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTATGAGTATCTGAATCTTGTTTCGA-
1 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGAT
* * *
129098 TTAGATTAAAAATAAATTCAGAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAATCCTTCAAT
66 TTA-ATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAAT
*
129163 TTTTTTGGCAG-TGAATTATATATTTTTT-TGAGTATTGTGGCAAAGAATTGAGGAAATAA-TTT
130 TTTTTTGGC-GTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGGAAA-AACATT
129225 TCGGGTCAGGTTTTGCAAAATTTTAGACGAAATCA-TGTACTAACCATAAC-GGTTTTTTTGGCT
193 TC--GT---G---T-C--AATTTTAGACGAAAT-AGTGTACTAACCATAACTGGTTTTTTTGGCT
*
129288 AAAAACACGTTCCGGAGCCA-CGACTCAATTATGCATGATTTTTGGC-GTAAAGACTCCTTGAAA
246 AAAAACACGTTCCGG-GCCACCGACTCAATTATGCAAGATTTTTGGCAG-AAAGACTCCTTGAAA
129351 TATCTATATTCATCA
309 TATCTATATTCATCA
** * * *
129366 AACTGAATCTCAGCCACATTGGATTTAATGATTTGTTTTTACAAGTATCTGAATCTTGTTTCCAT
1 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGAT
* *
129431 TTAATTAGAAATAAATTCGGAAAAAAAAAT-G-AAAACGATATTGGAAGCGTGAAAAACCCTTCA
66 TTAATTAGAAATAAATTC---AGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCA
* * * *
129494 ATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATAGTGGCAATGAATTGTGGAAAAAAAAA
128 ATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGG--AAAAACA
* * * * *
129559 TTTCGAGTCAGTTTTAGCCGAAATCGTGTACTAACCATCAC-GG-TTTTTT-GCTAAAA
191 TTTCGTGTCAATTTTAGACGAAATAGTGTACTAACCATAACTGGTTTTTTTGGCTAAAA
129615 CGCGATTCGA
Statistics
Matches: 496, Mismatches: 57, Indels: 60
0.81 0.09 0.10
Matches are distributed among these distances:
323 27 0.05
324 33 0.07
325 49 0.10
326 30 0.06
327 74 0.15
328 1 0.00
329 1 0.00
331 2 0.00
332 146 0.29
333 64 0.13
334 24 0.05
335 37 0.07
336 8 0.02
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (323 bp):
AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGAT
TTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATT
TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGGAAAAACATTTCG
TGTCAATTTTAGACGAAATAGTGTACTAACCATAACTGGTTTTTTTGGCTAAAAACACGTTCCGG
GCCACCGACTCAATTATGCAAGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCA
Found at i:131357 original size:321 final size:320
Alignment explanation
Indices: 129662--132608 Score: 3103
Period size: 331 Copynumber: 9.1 Consensus size: 320
129652 TGCATTGTAT
* * *
129662 TTTCGATTTAATTAGAAATTAATTTGGAAAAAAATGGAAAAACCATATTAGAAGCGTAAAAAACC
1 TTTCGATTTAATTAGAAATTAA-TTCGAAAAAAATGGAAAAACAATATTAGAAGCGT-GAAAACC
* *
129727 CTTCACT-TTTTTGGTGTTGAATTATATATTTTTT-TGAGTATTGTGGCAAAAAATT-TAGAAAA
64 CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGTAGAAAA
* * * * * *
129789 AACTTTTCGAGTCAGTTTTAGCCAAAATCGT-AACT-A--ATCACGGTTTTTGG-TAAAAATGCG
129 AA-TTTTCGGGTTAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG
* * * * *
129849 TTTTGG-GACCCCGACTCAGTTTTGCATTATCTTTGGCTGAAAGACTCCTTGAAATAT-TCATAT
193 TTTCGGAG-CCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCT-ATAT
* * *
129912 TTATCTAACCAAATCTCAA-CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
256 TCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * *
129976 CTTCGATTTAATTAGAAATAAATTCGAAAAAGAA-GGAAAACCGATATTAGAAGTGTGAAAAACC
1 TTTCGATTTAATTAGAAATTAATTCGAAAAA-AATGGAAAAACAATATTAGAAGCGTG-AAAACC
* * * * *
130040 CTTCAA--TTTTTGGGGTGCAGAATTAAATATTTTTTCTGAGTGA-TGTGGCAAAGAATT-AAGG
64 CTTCAATCTTTTTGGCGT--TGAATTATATATTTTTTCTGAGT-ATTGTGGCAAAAAATTGTA-G
* * **
130101 AATAAATTTACGGGTCAGTTTGTGCAAAATTTTAGCCGAAATCGTGCGCTAACCATCACGGTTTT
125 AAAAAATTTTC-GG---G--T-T----AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT
* ** * * * * * *
130166 TGGCTAAACACATGTTCCAGAGCCCCGGCTCAATTTTGCATGATTTTTGGCACAAAGACTCGTTT
179 TGGCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTG
*
130231 AAATATCTATATTCATCGAACCAAATC-CCAGCCAAATTGGATTTAAGGA-TTGTTTTTACGAGC
244 AAATATCTATATTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGC
*
130294 ATCAGAATCTTG
309 ATCTGAATCTTG
* * *
130306 TTTCGATTTAATTAGAAATAAATTCGGAAAAACATGGAAAAACGATATTAGAAGCGTGAAAACCC
1 TTTCGATTTAATTAGAAATTAATTC-GAAAAAAATGGAAAAACAATATTAGAAGCGTGAAAA-CC
* ** * * *
130371 CTTCAATTTTTTTATCGTTGAATTATATATTTTTTCTAAGTATAGTGGAAAAAAATTG-AGGAAA
64 CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGTA-GAAA
* * *
130435 AACTTTTCGGGTCAGTTTTTACAAAATTTTAGCCGAAATCGTATACTAACCATCACGATTTTTGG
128 AAATTTTC-GG---G---TT----AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * * * *
130500 CTAAAAACGCGTTCCGGAGCCCCAGCTGAATTTTGCATGAATTTTGGC-GCAAAGACTACTCGAA
182 CTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAG-AAAGACTCCTTGAA
* ** *
130564 ATATCTATATTCATCGAATCAAATCTC-AGCCGCATTGGATATAAGGATTTGTTTTTACGAGCAT
246 ATATCTATATTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCAT
*
130628 TTGAATCTTG
311 CTGAATCTTG
*
130638 TTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACAATATTAGAAACGTGAAAATCC
1 TTTCGATTTAATTAGAAATTAATTC-GAAAAAAATGGAAAAACAATATTAGAAGCGTGAAAA-CC
* * * * *
130703 CGTGAATCTTTTTGGGGTAGAATTATATATTTTTT-TAGAGTATTGTGGCAAAAAATT-AAGAAA
64 CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTCT-GAGTATTGTGGCAAAAAATTGTAG-AA
* ** * *
130766 AAAGATTTT-GGGTCAATTTTTAGAAGAAATCATGTACTAACCACCACGGGTTTTT-GCTAAAAA
127 AAA-ATTTTCGGGTTAA-TTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAAA
***
130829 CGCGTTTCGG-G--GTTGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTAT
189 CGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTAT
* * * *
130891 ATTTTATCAAACCAAAACACAA-CCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
254 A-TTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
130955 TTG
318 TTG
* * * * *
130958 TTTCAATTTAATTAAAAATAAATTCGGAAAAAAT-GAAAAACGATATTAGAAGCGTGAAAAACCC
1 TTTCGATTTAATTAGAAATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGCGTG-AAAACCC
* * ** *
131022 TTCAATTTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGATAAAAAAGTTGTGGATAA
65 TTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAA-TTGTAGA-AA
* * * * *
131087 AAATTTTCGGGTTAGTTTTAGCCGAAATCATGTACT-ACCATCATGATTTTTGGCTAAAAACGTG
128 AAATTTTCGGGTTAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG
* * * * * * *
131151 TTCCGGAGTCCCGGCTCAATTTTGCATGATTTTTGGCACAAAGACTACTCGAAATATCTATATTT
193 TTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTC
* * * *
131216 ATCGAATCAAATCTCTA-CCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTG
258 ATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * *
131278 TTTTGATTTAATTAGAAATTAATTC-AGAAAAAATGGGAAAACAATATTGGAAGCGTGAAAATCC
1 TTTCGATTTAATTAGAAATTAATTCGA-AAAAAATGGAAAAACAATATTAGAAGCGTGAAAACCC
* *
131342 TGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCGGAGTATTATGG-AAAAAATTGTTA-AAA
65 T-TCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG-TAGAAA
*
131405 AAAGTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACG
128 AAA-TTTTCGGGTTAA-TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACG
*
131470 CGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATAT
191 CGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATAT
* *
131535 TCATCTAACCAAATCACAA-CCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
256 TCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* *
131599 TTTTGATTTAATTAGAAATTAATTCGAAAAAAATGGAAAAACAATATTATAAGCGTGAAAATCCC
1 TTTCGATTTAATTAGAAATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGCGTGAAAA-CCC
* * * ** *
131664 GTCAATCTTTTTGACTTTGAAATATATATATATATATATATTTTCAAAGTATTGTGG-TAAAAAT
65 TTCAATCTTTTTGGCGTTG------A-AT-TATATAT-T-TTTTCTGAGTATTGTGGCAAAAAAT
* *
131728 TG-AGAAAAGAGTTTTCGGGTCAATTTTAGCCGAAATCGTGTACTAATCCATCACGGGTTTTTGG
120 TGTAGAAAA-AATTTTCGGGTTAATTTTAGCCGAAATCGTGTACTAA-CCATCAC-GGTTTTTGG
* * ** *
131792 CTAAACACGCGTTTCGGTGCCCTAGCACAGTTTTGCATGATTTTTGGCAGAAAGACTCCTT-AAA
182 CTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAA
* *
131856 TATCTATATTCATCTAACCAAATC-AAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATC
247 TATCTATATTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATC
*
131920 TAAATCTTG
312 TGAATCTTG
*
131929 TTTCGATTTAATTAGAAATTAATTCGAAGAAAAATGGAAAAACAATATTATAAGCGTGAAAATCC
1 TTTCGATTTAATTAGAAATTAATTCGAA-AAAAATGGAAAAACAATATTAGAAGCGTGAAAA-CC
* * * * ** *
131994 CGTCAATCTTTTTGACATTGAAATATATATTTTTTTTTCAAAGTATTGTGGTAAAAAATTG-AGA
64 CTTCAATCTTTTTGGCGTTG-AAT-TATA-TATTTTTTCTGAGTATTGTGGCAAAAAATTGTAGA
* * * *
132058 AAAGAGTTTTCAGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACAGGTTTTTGGCTAAAC
126 AAA-AATTTTCGGGTTAA-TTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTGGCTAAAA
* *
132123 ACGCATTTCGGCGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTT-AAATATCTA
188 ACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTA
* *
132187 TATTCATCTAACCAAATC-AAAGCCAAATTGGATTTAAGGA-TTGTTTTTACGAGCATCTGAATC
253 TATTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
132250 TTG
318 TTG
* *
132253 TTTCGATTTAATTAGAAATAAATTCGAAAAAACATGGAAAAACGATATTAGAAGCGTGAAAACCC
1 TTTCGATTTAATTAGAAATTAATTCGAAAAAA-ATGGAAAAACAATATTAGAAGCGTGAAAA-CC
* ** * * *
132318 CTTCAATTTTTTTATCGTTGAATTATATATTTTTTCTGGGTATAGTGG-AAAAATATTGTGGAAA
64 CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAA-ATTGTAGAAA
* * * *
132382 AACTTATCGGGTTAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGATTTTTGG
128 AAATTTTC-GG---G---TT----AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * * *
132447 CTAAAAACGCGTTCCGGAGTCCCAGG-TGAATTTTGCATGATTTTTGGC-GCAAAGACTACTCGA
182 CTAAAAACGCGTTTCGGAG-CCCCGGCTCAGTTTTGCATGATTTTTGGCAG-AAAGACTCCTTGA
* * * * *
132510 AATATCTATATTCATGGAATCAAATCTC-AGCCACATTGGATATAAGG-TTTATTTTTTACGAGC
245 AATATCTATATTCATCGAACCAAATCTCAAGCCAAATTGGATTTAAGGATTT-GTTTTTACGAGC
*
132573 ATTTGAATCTTG
309 ATCTGAATCTTG
132585 TTTCGATTTAATTAGAAATTAATT
1 TTTCGATTTAATTAGAAATTAATT
Statistics
Matches: 2264, Mismatches: 265, Indels: 190
0.83 0.10 0.07
Matches are distributed among these distances:
312 9 0.00
313 38 0.02
314 37 0.02
315 23 0.01
316 8 0.00
317 6 0.00
318 95 0.04
319 98 0.04
320 212 0.09
321 345 0.15
322 55 0.02
323 13 0.01
324 113 0.05
325 159 0.07
326 42 0.02
327 3 0.00
328 5 0.00
329 34 0.02
330 245 0.11
331 525 0.23
332 188 0.08
333 11 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (320 bp):
TTTCGATTTAATTAGAAATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGCGTGAAAACCCT
TCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGTAGAAAAAA
TTTTCGGGTTAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
CGGAGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATC
GAACCAAATCTCAAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
Done.