Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016490.1 Corchorus olitorius cultivar O-4 contig16523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36943

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2375--2533
78
2.0
78
97
0
300
44
11
22
21
1.84
6006--6064
20
3.2
17
72
23
57
59
5
3
32
1.36
5989--6064
37
2.0
38
94
2
136
55
5
5
34
1.45
5989--6048
20
3.2
20
71
22
65
53
6
6
33
1.53
9188--9217
2
15.0
2
100
0
60
50
0
0
50
1.00
10875--10933
31
1.9
31
89
6
93
37
33
5
23
1.77
11549--11586
2
19.0
2
100
0
76
50
0
0
50
1.00
12182--12247
24
2.7
24
78
4
69
51
3
3
42
1.32
17251--17447
63
3.1
63
88
0
268
32
14
34
18
1.91
25509--25539
2
15.5
2
93
0
53
48
48
0
3
1.17
32880--32995
57
2.0
57
100
0
232
43
17
12
25
1.84

Tables:   1

The End!