Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016491.1 Corchorus olitorius cultivar O-4 contig16524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104617
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:347 original size:24 final size:24
Alignment explanation
Indices: 241--338 Score: 196
Period size: 24 Copynumber: 4.1 Consensus size: 24
231 AAAATTATTG
241 TTATTGTTATTACTAATATCAATA
1 TTATTGTTATTACTAATATCAATA
265 TTATTGTTATTACTAATATCAATA
1 TTATTGTTATTACTAATATCAATA
289 TTATTGTTATTACTAATATCAATA
1 TTATTGTTATTACTAATATCAATA
313 TTATTGTTATTACTAATATCAATA
1 TTATTGTTATTACTAATATCAATA
337 TT
1 TT
339 GTATTTATTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (24 bp):
TTATTGTTATTACTAATATCAATA
Found at i:2825 original size:61 final size:61
Alignment explanation
Indices: 2730--2854 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
2720 CATCGACAAC
2730 AATGAATCATAAACATACATTCAATTTCCATCACCATTTGAAGACTCCACCAGTTGCTCAT
1 AATGAATCATAAACATACATTCAATTTCCATCACCATTTGAAGACTCCACCAGTTGCTCAT
2791 AATGAATCATAAACATACATTCAATTTCCATCACCATTTGAAGACTCCACCAGTTGCTCAT
1 AATGAATCATAAACATACATTCAATTTCCATCACCATTTGAAGACTCCACCAGTTGCTCAT
2852 AAT
1 AAT
2855 CTATGATACC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.30
Consensus pattern (61 bp):
AATGAATCATAAACATACATTCAATTTCCATCACCATTTGAAGACTCCACCAGTTGCTCAT
Found at i:2982 original size:29 final size:30
Alignment explanation
Indices: 2941--3009 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
2931 TTGCAATAGT
*
2941 CAAATAAGCCTCT-AAACTT-TAATTTTAGC
1 CAAATAAGCCTCTGAAA-TTCCAATTTTAGC
*
2970 CAAATAAGCCTCTGAAATTCCAATTTTTGC
1 CAAATAAGCCTCTGAAATTCCAATTTTAGC
*
3000 CAGATAAGCC
1 CAAATAAGCC
3010 CTTCTAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.30
Consensus pattern (30 bp):
CAAATAAGCCTCTGAAATTCCAATTTTAGC
Found at i:5137 original size:6 final size:6
Alignment explanation
Indices: 5128--5177 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
5118 ATATATATAT
*
5128 ATACTA ATACTA ATACTA ATACTA ATACT- ATACTA ATACTA ATATTA
1 ATACTA ATACTA ATACTA ATACTA ATACTA ATACTA ATACTA ATACTA
5175 ATA
1 ATA
5178 AATAAATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
5 5 0.12
6 37 0.88
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (6 bp):
ATACTA
Found at i:5941 original size:29 final size:31
Alignment explanation
Indices: 5898--5955 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
5888 GTCTAGAACT
*
5898 CAACAATATTAGGGAAAT-ATTTTTTTTTGG
1 CAACAATATTAGGGAAATAATTTATTTTTGG
5928 CAAC-ATATTAGGGAAATAATTTATTTTT
1 CAACAATATTAGGGAAATAATTTATTTTT
5956 ATGGTATACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (31 bp):
CAACAATATTAGGGAAATAATTTATTTTTGG
Found at i:12396 original size:18 final size:18
Alignment explanation
Indices: 12373--12410 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
12363 TCCTTCCAAA
* *
12373 AAGAGTCGGTTACTTTGG
1 AAGAGTCCGTTAATTTGG
12391 AAGAGTCCGTTAATTTGG
1 AAGAGTCCGTTAATTTGG
12409 AA
1 AA
12411 CTGAGAGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (18 bp):
AAGAGTCCGTTAATTTGG
Found at i:12944 original size:2 final size:2
Alignment explanation
Indices: 12933--12963 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
12923 ACTCTCATCA
12933 CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
12964 TTCTTTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:24452 original size:7 final size:6
Alignment explanation
Indices: 24436--24469 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
24426 AGATGTAAGC
* *
24436 TTTTTA TTTTTA TTTTTA TTTTTA ATTTTC TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
24470 CCTTTGCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:37580 original size:67 final size:67
Alignment explanation
Indices: 37467--37607 Score: 255
Period size: 67 Copynumber: 2.1 Consensus size: 67
37457 ATGCCTTTGA
*
37467 TTATCATCGAGGATTGTACAAATCAAATGTAGACTTGGTAAGAAATCTGAATTATGTTTTCTTTT
1 TTAT-ATCGAGGATTATACAAATCAAATGTAGACTTGGTAAGAAATCTGAATTATGTTTTCTTTT
37532 GGT
65 GGT
*
37535 TTATATCGAGGATTATACAGATCAAATGTAGACTTGGTAAGAAATCTGAATTATGTTTTCTTTTG
1 TTATATCGAGGATTATACAAATCAAATGTAGACTTGGTAAGAAATCTGAATTATGTTTTCTTTTG
37600 GT
66 GT
37602 TTATAT
1 TTATAT
37608 TGAGTGTTTG
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
67 67 0.94
68 4 0.06
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (67 bp):
TTATATCGAGGATTATACAAATCAAATGTAGACTTGGTAAGAAATCTGAATTATGTTTTCTTTTG
GT
Found at i:43154 original size:96 final size:96
Alignment explanation
Indices: 43030--43222 Score: 350
Period size: 96 Copynumber: 2.0 Consensus size: 96
43020 CAGACCAACC
43030 TTGGTCTCGTGAAAATGAGACAGTATATCGTCAACCTCATTCAGCAAATCTCCCTCTTGGTCTTT
1 TTGGTCTCGTGAAAATGAGACAGTATATCGTCAACCTCATTCAGCAAATCTCCCTCTTGGTCTTT
*
43095 TGGGCGCGCCGGCAAGTGAAGGCCCTCCTGG
66 TGGGCGCACCGGCAAGTGAAGGCCCTCCTGG
* *
43126 TTGGTCTCGTGAAAATGAGACAGTATATCGTCAACCTCCTTCAGCAAATCTCCCTTTTGGTCTTT
1 TTGGTCTCGTGAAAATGAGACAGTATATCGTCAACCTCATTCAGCAAATCTCCCTCTTGGTCTTT
*
43191 TGGGCGCACCGGCGAGTGAAGGCCCTCCTGG
66 TGGGCGCACCGGCAAGTGAAGGCCCTCCTGG
43222 T
1 T
43223 GGTGATGTTG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (96 bp):
TTGGTCTCGTGAAAATGAGACAGTATATCGTCAACCTCATTCAGCAAATCTCCCTCTTGGTCTTT
TGGGCGCACCGGCAAGTGAAGGCCCTCCTGG
Found at i:45494 original size:14 final size:14
Alignment explanation
Indices: 45475--45502 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45465 TACTTATGCC
45475 TTGTATATATATCT
1 TTGTATATATATCT
45489 TTGTATATATATCT
1 TTGTATATATATCT
45503 ATATGCAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
TTGTATATATATCT
Found at i:45671 original size:23 final size:23
Alignment explanation
Indices: 45641--45688 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
45631 CTTGCTTTCC
45641 TGCTTTTCTTAGGTCTACTCATA
1 TGCTTTTCTTAGGTCTACTCATA
45664 TGCTTTTCTTAGGTCTACTCATA
1 TGCTTTTCTTAGGTCTACTCATA
45687 TG
1 TG
45689 AATGATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.48
Consensus pattern (23 bp):
TGCTTTTCTTAGGTCTACTCATA
Found at i:49071 original size:2 final size:2
Alignment explanation
Indices: 49064--49088 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49054 TATATTCATT
49064 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
49089 CTTTCGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55415 original size:31 final size:31
Alignment explanation
Indices: 55377--55438 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
55367 ATCCCATGTT
55377 GATTGCTATTTGCTAATGTTAGATAATCAAA
1 GATTGCTATTTGCTAATGTTAGATAATCAAA
55408 GATTGCTATTTGCTAATGTTAGATAATCAAA
1 GATTGCTATTTGCTAATGTTAGATAATCAAA
55439 TTCAGATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (31 bp):
GATTGCTATTTGCTAATGTTAGATAATCAAA
Found at i:58544 original size:18 final size:18
Alignment explanation
Indices: 58521--58564 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
58511 CTAAAAGGGT
58521 GGGAAAGTTAACTTTCCC
1 GGGAAAGTTAACTTTCCC
58539 GGGAAAGTTAACTTTCCC
1 GGGAAAGTTAACTTTCCC
*
58557 AGGAAAGT
1 GGGAAAGT
58565 GTTACTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (18 bp):
GGGAAAGTTAACTTTCCC
Found at i:61826 original size:59 final size:59
Alignment explanation
Indices: 61734--61858 Score: 214
Period size: 59 Copynumber: 2.1 Consensus size: 59
61724 CTAATAGGAG
* * *
61734 TAGCAAGCATAAATTGAAGAAAACAGGTATAATTGTCTGTTGCTCCATAGCTTCATGAA
1 TAGCAAGCATAAATTGAAGAAAACAGATATAATTGTCTGTTGCTACATAACTTCATGAA
*
61793 TAGCAAGCATAAATTGAAGAAAACAGATATAATTGTCTGTTGCTATATAACTTCATGAA
1 TAGCAAGCATAAATTGAAGAAAACAGATATAATTGTCTGTTGCTACATAACTTCATGAA
61852 TAGCAAG
1 TAGCAAG
61859 TGATATAAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (59 bp):
TAGCAAGCATAAATTGAAGAAAACAGATATAATTGTCTGTTGCTACATAACTTCATGAA
Found at i:62687 original size:24 final size:24
Alignment explanation
Indices: 62655--62702 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
62645 AGATCCTTGA
62655 GTGAATGTGTATTGATGGATGACC
1 GTGAATGTGTATTGATGGATGACC
62679 GTGAATGTGTATTGATGGATGACC
1 GTGAATGTGTATTGATGGATGACC
62703 ATTTTAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.33
Consensus pattern (24 bp):
GTGAATGTGTATTGATGGATGACC
Found at i:62936 original size:29 final size:29
Alignment explanation
Indices: 62875--62951 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
62865 GAGTTTTTGA
62875 CCAAACCATTGTAATTCTTAAAAATAATCC
1 CCAAACCATTGTAATT-TTAAAAATAATCC
* * *
62905 CCAAACCATTGTACTTTTAAAATTAATTC
1 CCAAACCATTGTAATTTTAAAAATAATCC
*
62934 CCATAA-CATTGTATTTTT
1 CCA-AACCATTGTAATTTT
62952 TGCCACATCC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.38
Consensus pattern (29 bp):
CCAAACCATTGTAATTTTAAAAATAATCC
Found at i:64122 original size:30 final size:30
Alignment explanation
Indices: 64051--64128 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
64041 GAGATGTGGC
*
64051 AAGAAATACAATAGTTTGGGAATTAATTCT
1 AAGAAATACAATGGTTTGGGAATTAATTCT
* * *
64081 AA-AAGTACAATGGTTTGGGAATTATTTTT
1 AAGAAATACAATGGTTTGGGAATTAATTCT
* *
64110 AAGAACTACAATGGGTTGG
1 AAGAAATACAATGGTTTGG
64129 TTAAAAACTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 25 0.61
30 16 0.39
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.33
Consensus pattern (30 bp):
AAGAAATACAATGGTTTGGGAATTAATTCT
Found at i:64292 original size:14 final size:14
Alignment explanation
Indices: 64273--64302 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
64263 TGCAGAGAGT
64273 TCCTCTAATTTGCA
1 TCCTCTAATTTGCA
64287 TCCTCTAATTTGCA
1 TCCTCTAATTTGCA
64301 TC
1 TC
64303 AACTATACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (14 bp):
TCCTCTAATTTGCA
Found at i:67270 original size:24 final size:24
Alignment explanation
Indices: 67238--67300 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
67228 TATGTTATCA
67238 ATATATATCCTCTGCTTACACAAT
1 ATATATATCCTCTGCTTACACAAT
67262 ATATATATCCTCTGCTTACACAAT
1 ATATATATCCTCTGCTTACACAAT
67286 ATATATATCCTCTGC
1 ATATATATCCTCTGC
67301 CCATACGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (24 bp):
ATATATATCCTCTGCTTACACAAT
Found at i:69082 original size:53 final size:53
Alignment explanation
Indices: 69015--69142 Score: 256
Period size: 53 Copynumber: 2.4 Consensus size: 53
69005 TCTATGTTTT
69015 AATCTCGTCTCAGGACGTTAAATCAACTCTCCGCGAGTTTTTTCTTCTCTTTC
1 AATCTCGTCTCAGGACGTTAAATCAACTCTCCGCGAGTTTTTTCTTCTCTTTC
69068 AATCTCGTCTCAGGACGTTAAATCAACTCTCCGCGAGTTTTTTCTTCTCTTTC
1 AATCTCGTCTCAGGACGTTAAATCAACTCTCCGCGAGTTTTTTCTTCTCTTTC
69121 AATCTCGTCTCAGGACGTTAAA
1 AATCTCGTCTCAGGACGTTAAA
69143 ACATTTGTTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 75 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (53 bp):
AATCTCGTCTCAGGACGTTAAATCAACTCTCCGCGAGTTTTTTCTTCTCTTTC
Found at i:69928 original size:25 final size:25
Alignment explanation
Indices: 69894--69942 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
69884 TGTTAGTTTG
* *
69894 TAGAGACCGAGCGAGAGTGCTCAAA
1 TAGAAACCGAGCGAGAGTACTCAAA
69919 TAGAAACCGAGCGAGAGTACTCAA
1 TAGAAACCGAGCGAGAGTACTCAA
69943 GATTGCTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.12
Consensus pattern (25 bp):
TAGAAACCGAGCGAGAGTACTCAAA
Found at i:75234 original size:30 final size:29
Alignment explanation
Indices: 75172--75241 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
75162 ACCGGACCGT
* ****
75172 CAAATAAGCCCCTGAACTTTTATTTCGGC
1 CAAATAAGCCCCTGAACTTTAAAAAAGGC
75201 CAAATAAGCCCCTGAACTCTTAAAAAAGGC
1 CAAATAAGCCCCTGAACT-TTAAAAAAGGC
75231 CAAATAAGCCC
1 CAAATAAGCCC
75242 TGTTGCCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.21
Consensus pattern (29 bp):
CAAATAAGCCCCTGAACTTTAAAAAAGGC
Found at i:75822 original size:30 final size:30
Alignment explanation
Indices: 75786--75843 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
75776 CATTAAACCA
75786 TATAGTATTTGAAAGGATATGATGGAATTT
1 TATAGTATTTGAAAGGATATGATGGAATTT
75816 TATAGTATTTGAAAGGATATGATGGAAT
1 TATAGTATTTGAAAGGATATGATGGAAT
75844 ACTTTGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (30 bp):
TATAGTATTTGAAAGGATATGATGGAATTT
Found at i:80970 original size:33 final size:33
Alignment explanation
Indices: 80928--80995 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
80918 TTAACCATAT
*
80928 TATGCTCATGGTTCGAAAATAACAACATTCAGC
1 TATGCTCATGGTTCAAAAATAACAACATTCAGC
80961 TATGCTCATGGTTCAAAAATAACAACATTCAGC
1 TATGCTCATGGTTCAAAAATAACAACATTCAGC
80994 TA
1 TA
80996 AAGAAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (33 bp):
TATGCTCATGGTTCAAAAATAACAACATTCAGC
Found at i:85318 original size:23 final size:24
Alignment explanation
Indices: 85267--85319 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
85257 GTGTAGGAAT
*
85267 TGACTTTTGTGATCCCTTACCAAA
1 TGACGTTTGTGATCCCTTACCAAA
*
85291 TGACGTTTGTGATCCTTTACCAAA
1 TGACGTTTGTGATCCCTTACCAAA
85315 -GACGT
1 TGACGT
85320 CTTTCTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (24 bp):
TGACGTTTGTGATCCCTTACCAAA
Found at i:91243 original size:14 final size:16
Alignment explanation
Indices: 91224--91258 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
91214 TTATTGATGC
91224 AATATATCA-AAAA-A
1 AATATATCAGAAAATA
91238 AATATATCAGAAAATA
1 AATATATCAGAAAATA
91254 AATAT
1 AATAT
91259 GGTCTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 4 0.21
16 6 0.32
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (16 bp):
AATATATCAGAAAATA
Found at i:95453 original size:5 final size:5
Alignment explanation
Indices: 95443--95529 Score: 64
Period size: 5 Copynumber: 18.0 Consensus size: 5
95433 TCTTACTATC
95443 TACTA TACTA TACTA TACTATA TACTA TA-TA TA-TA TA-TAA TA-TA
1 TACTA TACTA TACTA TAC--TA TACTA TACTA TACTA TACT-A TACTA
*
95487 TA-TA TA-TA TACTA TA-TA CTA-TA TACTA TATATA TACTA TACTA
1 TACTA TACTA TACTA TACTA -TACTA TACTA TA-CTA TACTA TACTA
95530 CTATATAAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
4 24 0.33
5 40 0.55
6 4 0.05
7 5 0.07
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.44
Consensus pattern (5 bp):
TACTA
Found at i:95466 original size:17 final size:16
Alignment explanation
Indices: 95446--95536 Score: 111
Period size: 15 Copynumber: 5.8 Consensus size: 16
95436 TACTATCTAC
95446 TATACTATACTATACTA
1 TATACTATA-TATACTA
95463 TATACTATATATA-TA
1 TATACTATATATACTA
*
95478 TATAATATATATA-TA
1 TATACTATATATACTA
95493 TATAC--TATATACTA
1 TATACTATATATACTA
95507 TATACTATATATA-TA
1 TATACTATATATACTA
95522 CTATACTACTATATA
1 -TATACTA-TATATA
95537 AAATCACGAA
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
13 6 0.09
14 7 0.10
15 22 0.33
16 17 0.25
17 15 0.22
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.44
Consensus pattern (16 bp):
TATACTATATATACTA
Found at i:95471 original size:7 final size:7
Alignment explanation
Indices: 95436--95536 Score: 103
Period size: 7 Copynumber: 15.3 Consensus size: 7
95426 TTATATATCT
*
95436 TACTATC
1 TACTATA
95443 TACTATA
1 TACTATA
95450 CTA-TACTA
1 -TACTA-TA
95458 TACTATA
1 TACTATA
95465 TACTATA
1 TACTATA
95472 TA-TATA
1 TACTATA
95478 TA-TA-A
1 TACTATA
95483 TA-TATA
1 TACTATA
95489 TA-TATA
1 TACTATA
95495 TACTATA
1 TACTATA
95502 TACTATA
1 TACTATA
95509 TAC--TA
1 TACTATA
95514 TA-TATA
1 TACTATA
95520 TACTATA
1 TACTATA
95527 CTACTATA
1 -TACTATA
95535 TA
1 TA
95537 AAATCACGAA
Statistics
Matches: 84, Mismatches: 1, Indels: 18
0.82 0.01 0.17
Matches are distributed among these distances:
5 9 0.11
6 21 0.25
7 41 0.49
8 13 0.15
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (7 bp):
TACTATA
Found at i:95473 original size:2 final size:2
Alignment explanation
Indices: 95446--95536 Score: 85
Period size: 2 Copynumber: 41.0 Consensus size: 2
95436 TACTATCTAC
95446 TA TA CTA TA CTA TA CTA TA TA CTA TA TA TA TA TA TA -A TA TA TA
1 TA TA -TA TA -TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
95489 TA TA TA TA CTA TA TA CTA TA TA CTA TA TA TA TA CTA TA CTA CTA
1 TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA -TA TA -TA -TA
95533 TA TA
1 TA TA
95537 AAATCACGAA
Statistics
Matches: 79, Mismatches: 0, Indels: 20
0.80 0.00 0.20
Matches are distributed among these distances:
1 1 0.01
2 57 0.72
3 21 0.27
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:96913 original size:331 final size:332
Alignment explanation
Indices: 96146--100675 Score: 3448
Period size: 331 Copynumber: 13.6 Consensus size: 332
96136 ATACATTACA
* * * ** * *
96146 TCATCTAACCAAATCTCAGCAACATTGGATTTAAAAATTTGTTTTTACGAGTATCTG-AATCTTA
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
** * * *
96210 TTTCGATTTAATTAGAAATTAATTTTGAAAAAATAAGAAATACGATATTAAAAGCGTAAAAAGCC
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * ** *
96275 CTCCAATCTTTTTGGCAATCAATTATATAT-TTTTATGAGTATTTTAGGTAAACATTGAGGAAAA
131 CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * * * *
96339 ATCTTTCGTGTCAATTTTTGTAAAATTTTAGCTGAAATCGTGTACTAACAGTAAAGGCATCACGG
196 ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG---T-A-A-T-AA-CCATCACAG
* * * *
96404 CTTTTGGCTAAAAACGCGTTTCT-GGGACCCGGCTTAATTTTGCATGATTTTTGGCTCCGAGACT
253 TTTTTGGCTAAAAACGCG-TTCTAGGGCCCCGGC-TAGTTTTGCATGATTTTTGGCGCCGAGACT
*
96468 ACTTGAAATATCTATAT
316 CCTTGAAATATCTATAT
* * * *
96485 TCATCTAATCAATTCTCAGCCACATTGGACTTAAAGATTTGTTTTTACGAGCA-CATG-AATCTT
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATC-TGAAATCTT
* * * * *
96548 GTTTCGATTTAATTAGAAATTAATT-TGGAAAAATAGGAAAAACGATATTAGAAA-CGTCAAAAA
65 GTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTA-AAAGCGTGAAAAG
* ** * * *
96611 CCCTTCAATCTTTTTGGTTTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGTA
129 CCCTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAA
** * * * *
96676 TTATCTTTCGGGTCAATTTTTACAAGATTTTAGCCGAAATCATGTAATAATCATCACAGTTTTTG
194 AAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAGTTTTTG
* * * * * * *
96741 GCTAAAAAAGCATTCTAGGGCCCTGGCTCGCTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAG
259 GCTAAAAACGCGTTCTAGGGCCCCGGCTAG-TTTTGCATGATTTTTGGCGCCGAGACTCCTTGAA
* *
96806 ATATTTGTAT
323 ATATCTATAT
* * * * * *
96816 TAATCTAATCAGATCTCAGTCGCATTGCATTTAAGGATTTGTTTTTACGAGAATCTGAAAT-TT-
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * * *
96879 TTTCGATTTAATTATAAACTAATTCAGAAAAAATAT-------G---TGAAAAGCGTGAAAAGTC
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * * *
96934 CTCTAATCTTTTTGGCATTAAATTATATATATTTCAAGATTATTTTAGCCAAAAATTGAGGAAAA
131 CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * * * * * *
96999 ATTTTTCAGGTCATTTTTTTCCAAGATTTTAGCCGATATCGTGTACA-AACCATTACAGTTTTTT
196 ATCTTTCGGGTCA-ATTTTTGCAAAATTTTAGCCGAAATCGTGTA-ATAACCATCACAG----TT
* * * * * ** * * *
97063 TTTTGCTAAAAACGCCTTTTGGGGCCCGGGCTCAAATTTGCATGCTTTTTGGCGTCGGGACTCCT
255 TTTGGCTAAAAACGCGTTCTAGGGCCCCGGCT-AGTTTTGCATGATTTTTGGCGCCGAGACTCCT
97128 TGAAATATCTATAT
319 TGAAATATCTATAT
* * *
97142 TCATCTAATCAAATCTGAGCCTCATTGCATTTAAGGATTTGTTTTTACGAGCATCTG-AATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * * * * *
97206 TTTCGATTTAATCAGAAATTAATTCTG-AAAAATATGAATAACGCTTTTAAAAGCGTGAAAAGTC
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * * *
97270 CTCCAATATTTTTGG-AGTTGAATTATATATATCTTATGAGTATTTTAGAC-AAAATTCGAGGAA
131 CTCCAATCTTTTTGGCA-TTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATT-GAGGAA
* * * * * * * *
97333 AAATATCTCTGGTCAATTTTTGCAAAATATTAGCTGAAATCGTGTACGTTAGTCGAAGTCA-AGG
194 AAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTA--ATA-AC-CA-TCACA--
* * * * * * * ** ** *
97397 GTTTTTTGACTAAAAAAGCGTTCCAGGACCCCGGTTCAGTGTTACATTTTTTTTTGTTGCCAAGA
252 G-TTTTTGGCTAAAAACGCGTTCTAGGGCCCCGGCT-AGTTTTGCA-TGATTTTTGGCGCCGAGA
*
97462 CTCATTGAAATATCTATAT
314 CTCCTTGAAATATCTATAT
* * * * *** * * *
97481 TCATCTAACCAAATTTCAGCCACATTAAATTTAAGGATATG-TAAAACAAGCATC-CAAATCATG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * ** * * * *
97544 TTGCGATTTAATTAGAAGTTAATTTGGAAAAAAATAGGAAACACGATATTAGAAGCATGAAAAGC
66 TTTCGATTTAATTAGAAATTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGC
* * * * * **
97609 CCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGT-GGCAAAAATTGAGTTAA
130 CCTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAA
* * * * * * *
97673 TACCTTTCGAGTCAATTTTTGCAAGATTCTAGCCGAAATCGTGTAATAATCATCA-AGGTTTTGG
195 AATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAGTTTTTGG
* * * * * *
97737 CTAAAAATGCGTTC-CGAGGCCCCGACTAAGTTTTGCATGACTTTTTGGCGCCAAGTCTCTTTGA
260 CTAAAAACGCGTTCTAG-GGCCCCGGCT-AGTTTTGCATGA-TTTTTGGCGCCGAGACTCCTTGA
* *
97801 GATATCCATAT
322 AATATCTATAT
* * * * * *
97812 TCATCAAATAAAATCTCAGCTACATTGGATTTAAGAATTTGTTTTTACGAGCATCTG-AACCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* *
97876 TTTCGATTTAATTAGAAATTAATTCAG-AAAAATATGAAAAA-GAATATTAAAAGCGTGACAAGT
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACG-ATATTAAAAGCGTGAAAAGC
* ** * * *
97939 ACTCCAATCTTTTTTACGTTAAAAATATATATATTTTATGAG-AATTTAGCCAAAAATTGACGGA
130 CCTCCAATCTTTTTGGCATT-AAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGA-GGA
* * * * * *
98003 AAAATTTTTCTGGTCATTTTTTTACAAAATTTTAGACGAAATCGTGTACTAACCATCACAGTTTT
193 AAAATCTTTCGGGTCA-ATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAGTTTT
*** * * * *
98068 TGGCTAAAAACGCGTT-TCAATTCCCCGACTTAGTTTTGCATGATTTTTGGCACCGTGACTCCAT
257 TGGCTAAAAACGCGTTCT-AGGGCCCCGGC-TAGTTTTGCATGATTTTTGGCGCCGAGACTCCTT
98132 GAAATATCTATAT
320 GAAATATCTATAT
* *
98145 TCATCTAATCAAATATCAGCCACATTGAATTTAAGGATTTGTTTTTATGAGCATCT-AAATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
*
98209 TTTCGATTTAATTAGAAATTAATT-A-AAAAATATATGAAAAACGATATTAAAAGCGTGAAAAGT
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAA-ATATGAAAAACGATATTAAAAGCGTGAAAAGC
* * *
98272 CCTCCAATATTTTTGGCGTTAAATTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACGG-A
130 CCTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGA-GGAA
* * * * *
98336 AAAT-TTTCCGGGTCACTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCATGATTTTT
194 AAATCTTT-CGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCA-CAGTTTT
* * *
98400 TGGCTAAAAACGCGTT-TCGGGACCCCGGCTTAGTTTTGCATTATTTTTGGCGCCGAGACTCCAT
257 TGGCTAAAAACGCGTTCTAGGG-CCCCGGC-TAGTTTTGCATGATTTTTGGCGCCGAGACTCCTT
98464 GAAATATCTATAT
320 GAAATATCTATAT
* * * * *
98477 TCATTTAATC-AATTTCTGCCACATTGAATTTAAGTATTTGTTTTTACGAGCATCT-AAATCATG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * * *
98540 TTTTGATTTAATTAGAAATTAATTTAGAGAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCA
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * *
98605 CTCCAATCTTTTTTTGTCGTTAAATTGCATATATATATATTATGAGTATTTTAGTCAAAAATTGA
131 CTCCAATC--TTTTTGGCATTAAATT--ATATATAT-T-TTATGAGTATTTTAGCCAAAAATTGA
** ** * *
98670 CAAAAAAAAATTT--GGTCATTTTTTTGTAAAATTTTAGCCGAAATC--G------------CAG
190 -GGAAAAATCTTTCGGGTCA-ATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAG
* * * * * * *
98719 ATTTTGGTTAAAAAGGTGTT-TCGGGGCCCCGGCTTAGTTTTACATGATTTTTGGCACCGAGACT
253 TTTTTGGCTAAAAACGCGTTCT-AGGGCCCCGGC-TAGTTTTGCATGATTTTTGGCGCCGAGACT
*
98783 CCATGAAATATCTATAT
316 CCTTGAAATATCTATAT
* * * * *
98800 TCATCTAATCAAATATCAGCCACATTGAACTTAAGGATCTGCTTTTACGAGAATCTG-AATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * * *
98864 TTTCGATTTAATTAGAAATTAATTCA-AAAAAATATGAAAATCAATATTAAAAGCGTGAAATGTC
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * *
98928 CTCCAATATTTTTGGCGTT--A--A-A-CTA---TAT--GTATTTTAGCCAAAAATTGACGGAAA
131 CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGA-GG--A
* * * * *
98982 AAAAT-TTTCGGGTCACTTTTTGCAAAAGTTTAGCCGAAATCGTGTACTAACCATCATGATTTTT
193 AAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCA-CA-GTTT
* * * * *
99046 TTGGCTAAAAATGCGTT-TCGGGACCTCGGCTTAGTTTTGCATGATTTTTGGCGGCGAGACTCCA
256 TTGGCTAAAAACGCGTTCTAGGG-CCCCGGC-TAGTTTTGCATGATTTTTGGCGCCGAGACTCCT
99110 TGAAATATCTATAT
319 TGAAATATCTATAT
* * * * * *
99124 TCATATAATCAAATTTCTGCCGCATTGAATTTAAGTATTTGTTTTGACGAGCATCTG-AATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
** * *
99188 TTTCGATTTTTTTTTTTGGACAACGAATCTTGTTTCGATTTCATTAGAAATTAATTCAGAAAAAT
66 TTTCGA----TTTAATT-----A-GAA-----ATT--AATTC---AG----------A-AAAAAT
* * *
99253 ATGAAAAAAGATATTAAAAGCGTGAAAAGTCCTCCAATC--TTTGGCATTTAATTATATATA-TT
100 ATGAAAAACGATATTAAAAGCGTGAAAAGCCCTCCAATCTTTTTGGCATTAAATTATATATATTT
* * * * * * * * *
99315 TAGTGAGTATTGTGGCTAAAAATTGAAGACAAATATTTTGGATTAATTTTTGCAAAATTTTAGCC
165 TA-TGAGTATTTTAGCCAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCC
* * * *
99380 GAAATCGTG---T-ACCATCACGGTTTTTTGGCTAAAAACGCGTT-TGGGGGCCCTG-TCAGTTT
229 GAAATCGTGTAATAACCATCACAG-TTTTTGGCTAAAAACGCGTTCTAGGGCCCCGGCT-AGTTT
* * * * * **
99439 TGCATGATTTTTTGTGGCAAAACTATTTGAAATATCTATAT
292 TGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATAT
* * * * * *
99480 TCATCTAAACAAATCTTAGCCACATTGGATTTAAGGATTTGTTTTTGCGAGCATTTG-AATCATG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * ** * * * *
99544 TTTCGATTTAATTATAAATTAATTTATTAAAAA-A-GAAAAACGATATTAGAAGTGTGAGAAGCG
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * * ** * * * *
99607 CTTCAGTCTTTTTGGCGTTGGATTATATATTTTTTATGAGTATTATGGCTAAAAATTGA-GAAAA
131 CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
* * ** * **
99671 ATATTTCAGGTCAATTTTTGCAAAATTTTAAACGAAATCGTG---T-ACCATTATGGTTTTTTTG
196 ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAG--TTTTTG
* * * *** * * * * * *
99732 GCTAAAAACGTGTTATGGGGCCGTTGATCAGTTTTGCATGATTTTTGCCACCAAAACTCCTTAAA
259 GCTAAAAACGCGTTCTAGGGCCCCGGCT-AGTTTTGCATGATTTTTGGCGCCGAGACTCCTT-GA
99797 ATATATCTATAT
322 A-ATATCTATAT
* * ** **
99809 TCATCTTACCAAATCTCAGCCACATTTTATTTAAGGATTTG-TTTTACGAGTTTCT-AAATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* ** * * *
99872 TTTCGATTTAATCAGAAATTAATTTGGAAATAAA-ATAGGAAAACGATTTTAGAAGCGTGAAAAA
66 TTTCGATTTAATTAGAAATTAATTCAGAAA-AAATAT-GAAAAACGATATTAAAAGCGTG-AAAA
* * * * * * * * *
99936 GGCGTTCAATTTTTTTGGCGTTGAATTATATAT-TTCTTATGAGTATTTTCA-CTAGAAATCGAG
128 GCCCTCCAATCTTTTTGGCATTAAATTATATATATT-TTATGAGTATTTT-AGCCAAAAATTGAG
* * * * *
99999 TAAAAATCTTTCAGGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
191 GAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAG---
* * * * *
100064 TCACTTTTCAGCTAAAAACGCATTGC--GGGGCCTGGCTCAGTTTTGCATGATTTTTGGCGCCAA
253 T---TTTT-GGCTAAAAACGCGTT-CTAGGGCCCCGGCT-AGTTTTGCATGATTTTTGGCGCCGA
*
100127 GACGCCTTGAAA-ATCTATAT
312 GACTCCTTGAAATATCTATAT
* * *
100147 TCATCTAACCAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTG-AATCTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* * * *
100211 TTTCGATTTAATTAGAAATTAATTCAGAGAAAAATAGGAAAAACAATATTAGAAGCGTTAAAAGC
66 TTTCGATTTAATTAGAAATTAATTCAGA-AAAAATATGAAAAACGATATTAAAAGCGTGAAAAGC
** * * * * * *
100276 CCTTTAAT-TTTTT--TATGTCGAATTATATGTTTTTTTTATGAGTATTTTAGCGAAAATTTGA-
130 CCTCCAATCTTTTTGGCAT-T-AAATTATA--TATATTTTATGAGTATTTTAGCCAAAAATTGAG
* * * *
100337 GAAAATATCTTTCGGGTCAATTTTT--TAAA---T----GAAATTGTGTACTAATCATCACAGTT
191 GAAAA-ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAGTT
** * * * * **
100393 TTTGGCTAAAATTGCGTTCCT-GGGCCACGACTCTGTTTGGCATGATTTTTGGCGTTGAGACTCC
255 TTTGGCTAAAAACGCGTT-CTAGGGCCCCGGCT-AGTTTTGCATGATTTTTGGCGCCGAGACTCC
*
100457 TTAAAATATCT-TAT
318 TTGAAATATCTATAT
* * * *** *
100471 TCATCTGATCAAATCTTAGCCACATTGGATTTAAGGATTTGTTTTTATTTGCATCTG-AATTTTG
1 TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
* ** * *
100535 TTTCTATTTAATTAGAAATTAATT-TTAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTC
66 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
* * * * * *
100599 CTCAAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTATTTTTGCCAAAAAGTAAGGAAAA
131 CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
*
100664 ATATTTCGGGTC
196 ATCTTTCGGGTC
100676 GTTTTTACCA
Statistics
Matches: 3394, Mismatches: 609, Indels: 394
0.77 0.14 0.09
Matches are distributed among these distances:
306 20 0.01
307 3 0.00
308 31 0.01
309 5 0.00
310 1 0.00
313 2 0.00
314 1 0.00
315 1 0.00
319 1 0.00
320 3 0.00
321 120 0.04
322 77 0.02
323 178 0.05
324 373 0.11
325 72 0.02
326 136 0.04
327 52 0.02
328 48 0.01
329 51 0.02
330 96 0.03
331 376 0.11
332 263 0.08
333 253 0.07
334 64 0.02
335 36 0.01
336 87 0.03
337 33 0.01
338 241 0.07
339 368 0.11
340 86 0.03
341 49 0.01
342 12 0.00
344 1 0.00
346 2 0.00
347 1 0.00
352 5 0.00
354 8 0.00
355 2 0.00
356 138 0.04
357 3 0.00
358 24 0.01
359 8 0.00
360 3 0.00
362 7 0.00
363 35 0.01
364 1 0.00
365 17 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (332 bp):
TCATCTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAATCTTG
TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCC
CTCCAATCTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA
ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATCACAGTTTTTGGC
TAAAAACGCGTTCTAGGGCCCCGGCTAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATA
TCTATAT
Found at i:101104 original size:27 final size:25
Alignment explanation
Indices: 101054--101106 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
101044 ATTTCCATTA
101054 TTTTAATAATGCAATAGTTAAAATAT
1 TTTTAATAATGCAATA-TTAAAATAT
101080 TTTTAAATAATGACAAT-TTAGAAATAT
1 TTTT-AATAATG-CAATATTA-AAATAT
101107 ATTTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.42
Consensus pattern (25 bp):
TTTTAATAATGCAATATTAAAATAT
Found at i:104351 original size:326 final size:327
Alignment explanation
Indices: 102605--104617 Score: 2811
Period size: 326 Copynumber: 6.1 Consensus size: 327
102595 ATTATGGCCC
* *
102605 TGAATTATATATTTTCAAATGAGTATTGTGGCTAAAAATTGTGGAAAAATCTTTCGGGTCAATTT
1 TGAATTATATATTTT-TAATGAGTATTGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTT
* * *
102670 TTGCAAAATTGTAGCCAAAATCGTG---T-AGCATCACGGTTTTTGGCTAAAAACACGTTCCGGG
65 TTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGG
* * *
102731 GACCCAGCTCAATTTTGCATGATTTTTGGCACCATGACTCCTTGAAATATCTATTTTAATCTAAC
130 GACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTCTAAC
* *
102796 CAAATCTCAACCATTTTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCATGGTTCGATTTA
195 CAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTTA
* * *
102861 ATAAAAAATTAATTCGGAAAAAAAAAGAAAAATAACTTAGAAGCGTGAAAAGACCTTCAGACTTT
260 ATAAAAAATTAATTCGG---AAAAAA-AAAAACAACTAAGAAGCGTGAAAAGACCTTCAGTCTTT
102926 TTGGCTT
321 TTGGCTT
* * * *
102933 TGAATTAGATATTCTTT-ATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTCTGATCAATTT
1 TGAATTATATATT-TTTAATGAGTATTGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTT
* * *
102997 TTGCAAAATTGTAGCCGAAATCGTGT-GTTA-CATCACGGTTTTTGACTAAAAACGCGATT-CGG
65 TTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG-TTCCGG
* * * * * *
103059 GGACCCCGCTCAATTTTGCATGACTGTTGGCGCCGTGACTCCTTGAAATATATATTTTTA-TTTA
129 GGACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTA-TTTTAGTCTA
* * * * *
103123 ACCAAATCTCAGCCACATT-GGATTTAAGGATTTGTTTTTAAGAGGATCAGAATCATGGTTCGAT
193 ACCAAATCTCAACCA-TTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGAT
* * * *
103187 TT-A-AAAAAATTATTTCCGAAAAAAAAGAAAGTAAAACAACCAAGAAGCCTGAAAAGACCTTCA
257 TTAATAAAAAATTAATT-CG---GAAAA-AAA--AAAACAACTAAGAAGCGTGAAAAGACCTTCA
103250 GTCTTTTTGGCTT
315 GTCTTTTTGGCTT
* *
103263 TGAATTAGATATTCTTT-ATGAGTATTGTGGC-AAAGAATTAAGGAAAAATCTTTCGGGTCAATT
1 TGAATTATATATT-TTTAATGAGTATTGTGGCTAAA-AATTGAGGAAAAATCTTTCGGGTCAATT
* * *
103326 TTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCATGGTTTATGGCTAAAAACACGTTCCGG
64 TTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGG
*
103391 GGACCCGGCTC-ATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAATCTAA
129 GGACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTCTAA
* * * *
103455 CTAAAGCTCAACCATTTTGGATTTAAGGATTTGTTTTTACGATCATCTGAATCATGGTTCGATTT
194 CCAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTT
* *
103520 AATAAAAAATTAATTACGGAAAAAGAAAAAAAAACAACTAAGAAGCGTGAAAAGGCCTTCCGTCT
259 AATAAAAAATTAATT-CGG---AA-AAAAAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGTCT
103585 TTTTGGCTT
319 TTTTGGCTT
*
103594 TGAATTATATATTTTTAATGAGTATTGTGG-TAAAAAATT-ATGGAAAAATATTTCGGGTCAATT
1 TGAATTATATATTTTTAATGAGTATTGTGGCT-AAAAATTGA-GGAAAAATCTTTCGGGTCAATT
*
103657 TTAGCAAAATTGTAGCCGAAATCGTGTACTAACTTACATCACGGTTTTTGGCTAAAAACGCGTTC
64 TTTGCAAAATTGTAGCCGAAATCGTGTACTAAC---CATCACGGTTTTTGGCTAAAAACGCGTTC
* *
103722 CGGGGACCCGGCTCAATTTTGCATGATTTTTGGTGCCATGACTTCTTGAAATATCTATTTTAGTC
126 CGGGGACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTC
* * *
103787 TAACCAAATCTCAACCATTTAGGATTTAAGGATTTATTTTTTCGAGCATCCGAATCATGGTTCGA
191 TAACCAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGA
103852 TTTAATAAAAAATTAATTCAGAGAAAAAAAAAGAAAAACAACTAAGAAGCGTGAAAACG-CCTTC
256 TTTAATAAAAAATTAATTC-G-G---AAAAAA-AAAAACAACTAAGAAGCGTGAAAA-GACCTTC
103916 AGTCTTTTTGGCTT
314 AGTCTTTTTGGCTT
*
103930 TGAATTGA-ATATTCTTT-ATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTCGGGTCAATT
1 TGAATT-ATATATT-TTTAATGAGTATTGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATT
* *
103993 TTTGCAAAATTGTAGCCTAAATCGTGTACTAACCGTCACGGTTTTTGGCTAAAAACGCGTTCCGG
64 TTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGG
* * * *
104058 GGAACCTGGCTCAATTTTGAATGATTTTTGGCGCCATGACTTCTTGAAATATGTATTTTAGTCTA
129 GG-ACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTCTA
*
104123 ACCAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATATGAATCATGGTTCGATT
193 ACCAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGATT
104188 TAAT-AAAAATTAATTCGG-AAAAAAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGTCTTTTT
258 TAATAAAAAATTAATTCGGAAAAAAAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGTCTTTTT
104251 GGCTT
323 GGCTT
* * *
104256 TAAATTATATATTTTTAATGAGTATTGTGGCTAAAAATTGTGGAAAAATCTTTCGGGTCAATATT
1 TGAATTATATATTTTTAATGAGTATTGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTT
104321 TGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGG
66 TGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGG
* * * * * *
104386 ACCCGGATCAATTTTTGAATGATTTTTGACACCGTGACTTCTTGAAATATCTATTTTAGTCTAAC
131 ACCCGGCTCAA-TTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTCTAAC
*
104451 CAAATCTCAACCATTTAGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTTA
195 CAAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTTA
*
104516 AT-AAAAATTAATTCGGAAAAAAAAAAAGCAACTAAGAAGCGTGAAAAGGCCTTCAGATCTTTTT
260 ATAAAAAATTAATTCGGAAAAAAAAAAA-CAACTAAGAAGCGTGAAAAGACCTTCAG-TCTTTTT
104580 GGCTT
323 GGCTT
104585 TGAATTATATA-TTTTAATGAG--TTGTGGC-AAAAA
1 TGAATTATATATTTTTAATGAGTATTGTGGCTAAAAA
Statistics
Matches: 1530, Mismatches: 105, Indels: 103
0.88 0.06 0.06
Matches are distributed among these distances:
325 19 0.01
326 296 0.19
327 93 0.06
328 57 0.04
329 165 0.11
330 143 0.09
331 223 0.15
332 40 0.03
333 63 0.04
334 166 0.11
335 128 0.08
336 131 0.09
337 6 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (327 bp):
TGAATTATATATTTTTAATGAGTATTGTGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTT
TGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGG
ACCCGGCTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAGTCTAACC
AAATCTCAACCATTTAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTTAA
TAAAAAATTAATTCGGAAAAAAAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGTCTTTTTGGC
TT
Found at i:104410 original size:995 final size:980
Alignment explanation
Indices: 102605--104617 Score: 3018
Period size: 995 Copynumber: 2.0 Consensus size: 980
102595 ATTATGGCCC
* * *
102605 TGAATTATATATTTTCAAATGAGTATTGTGGCTAAAAATTGTGGAAAAATCTTTCGGGTCAATTT
1 TGAATTATATATTTT-TAATGAGTATTGTGGCTAAAAATTATGGAAAAATATTTCGGGTCAATTT
* *
102670 TTGCAAAATTGTAGCCAAAATCGTGTAGCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGACC
65 TAGCAAAATTGTAGCCAAAATCGTGTAACATCACGGTTTTTGGCTAAAAACACGTTCCGGGGACC
102735 CAGCTCAATTTTGCATGATTTTTGGCACCATGACTCCTTGAAATATCTATTTTAATCTAACCAAA
130 CAGCTCAATTTTGCATGATTTTTGGCACCATGACTCCTTGAAATATCTATTTTAATCTAACCAAA
* *
102800 TCTCAACCATTTTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCATGGTTCGATTTAATAA
195 TCTCAACCATTTAGGATTTAAGGATTTATTTTTACGAGCATCCGAATCATGGTTCGATTTAATAA
* *
102865 AAAATTAATTCGGAAAAAAAAAGAAAAATAACTTAGAAGCGTGAAAAGACCTTCAGACTTTTTGG
260 AAAATTAATTCGGAAAAAAAAAGAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGACTTTTTGG
*
102930 CTTTGAATTAGATATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTCTGATCAAT
325 CTTTGAATTAGATATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTCGGATCAAT
* *
102995 TTTTGCAAAATTGTAGCCGAAATCGTGTGTTACATCACGGTTTTTGACTAAAAACGCGATTCGGG
390 TTTTGCAAAATTGTAGCCGAAATCGTGTCTAACATCACGGTTTTTGACTAAAAACGCGATTCGGG
* * *
103060 GACCCCGCTCAATTTTGCATGACTGTTGGCGCCGTGACTCCTTGAAATATATATTTTTATTTAAC
455 GACCCCGCTCAATTTTGAATGACTGTTGGCGCCATGACTCCTTGAAATATATATTTTTATCTAAC
* *
103125 CAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTAAGAGGATCAGAATCATGGTTCGATTTA
520 CAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTAAGAGCATCAGAATCATGGTTCGATTTA
*
103190 AAAAAATTATTTCCGAAAAAAAAGAAAGTAAAACAACCAAGAAGCCTGAAAAGACCTTCAGTCTT
585 AAAAAATTAATTCCG---AAAAAGAAAG-AAAACAACCAAGAAGCCTGAAAAGACCTTCAGTCTT
*
103255 TTTGGCTTTGAATTAGATATTCTTTATGAGTATTGTGGCAAAGAATTAAGGAAAAATCTTTCGGG
646 TTTGGCTTTAAATTAGATATTCTTTATGAGTATTGTGGCAAAGAATTAAGGAAAAATCTTTCGGG
* *
103320 TCAATTTTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCATGGTTTATGGCTAAAAACACG
711 TCAATATTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTATGGCTAAAAACACG
* * * *
103385 TTCCGGGGACCCGGCTCATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTAA
776 TTCCGGGGACCCGGATCATTTTGAATGATTTTTGACACCATGACTCCTTGAAATATCTATTTTAA
* * * *
103450 TCTAACTAAAGCTCAACCATTTTGGATTTAAGGATTTGTTTTTACGATCATCTGAATCATGGTTC
841 TCTAACCAAAGCTCAACCATTTAGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCATGGTTC
103515 GATTTAATAAAAAATTAATTACGGAAAAAGAAAAAAAAACAACTAAGAAGCGTGAAAAGGCCTTC
906 GATTTAAT-AAAAATTAATT-CGG--AAA-AAAAAAAAACAACTAAGAAGCGTGAAAAGGCCTTC
*
103580 CG-TCTTTTTGGCTT
966 AGATCTTTTTGGCTT
103594 TGAATTATATATTTTTAATGAGTATTGTGG-TAAAAAATTATGGAAAAATATTTCGGGTCAATTT
1 TGAATTATATATTTTTAATGAGTATTGTGGCT-AAAAATTATGGAAAAATATTTCGGGTCAATTT
* *
103658 TAGCAAAATTGTAGCCGAAATCGTGTACTAACTTACATCACGGTTTTTGGCTAAAAACGCGTTCC
65 TAGCAAAATTGTAGCCAAAATCGTG---T-A---ACATCACGGTTTTTGGCTAAAAACACGTTCC
* ** * *
103723 GGGGACCCGGCTCAATTTTGCATGATTTTTGGTGCCATGACTTCTTGAAATATCTATTTTAGTCT
123 GGGGACCCAGCTCAATTTTGCATGATTTTTGGCACCATGACTCCTTGAAATATCTATTTTAATCT
*
103788 AACCAAATCTCAACCATTTAGGATTTAAGGATTTATTTTTTCGAGCATCCGAATCATGGTTCGAT
188 AACCAAATCTCAACCATTTAGGATTTAAGGATTTATTTTTACGAGCATCCGAATCATGGTTCGAT
103853 TTAATAAAAAATTAATTCAGAGAAAAAAAAAGAAAAACAACTAAGAAGCGTGAAAACG-CCTTCA
253 TTAATAAAAAATTAATTC-G-GAAAAAAAAAGAAAAACAACTAAGAAGCGTGAAAA-GACCTTCA
*
103917 GTCTTTTTGGCTTTGAATT-GAATATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCT
315 GACTTTTTGGCTTTGAATTAG-ATATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCT
* * * *
103981 TTCGGGTCAATTTTTGCAAAATTGTAGCCTAAATCGTGTACTAACCGTCACGGTTTTTGGCTAAA
379 TTCGGATCAATTTTTGCAAAATTGTAGCCGAAATCGTGT-CTAA-CATCACGGTTTTTGACTAAA
** * * *
104046 AACGCG-TTCCGGGGAACCTGGCTCAATTTTGAATGATTTTTGGCGCCATGACTTCTTGAAATAT
442 AACGCGATT-CGGGG-ACCCCGCTCAATTTTGAATGACTGTTGGCGCCATGACTCCTTGAAATAT
* * *
104110 GTA-TTTTAGTCTAACCAAATCTCAACCA-TTTAGGATTTAAGGATTTGTTTTTACGAGCAT-AT
505 ATATTTTTA-TCTAACCAAATCTCAACCACATT-GGATTTAAGGATTTGTTTTTAAGAGCATCA-
* * *
104172 GAATCATGGTTCGATTTAATAAAAATTAATT-CG-GAAA-AAA-AAAACAACTAAGAAGCGTGAA
567 GAATCATGGTTCGATTTAA-AAAAATTAATTCCGAAAAAGAAAGAAAACAACCAAGAAGCCTGAA
* *
104233 AAGACCTTCAGTCTTTTTGGCTTTAAATTATATATT-TTTAATGAGTATTGTGGCTAAA-AATTG
631 AAGACCTTCAGTCTTTTTGGCTTTAAATTAGATATTCTTT-ATGAGTATTGTGGC-AAAGAATTA
*
104296 TGGAAAAATCTTTCGGGTCAATATTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGT
694 AGGAAAAATCTTTCGGGTCAATATTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGT
* * * *
104361 TTTTGGCTAAAAACGCGTTCCGGGGACCCGGATCAATTTTTGAATGATTTTTGACACCGTGACTT
759 TTATGGCTAAAAACACGTTCCGGGGACCCGGATC-A-TTTTGAATGATTTTTGACACCATGACTC
* *
104426 CTTGAAATATCTATTTTAGTCTAACCAAATCTCAACCATTTAGGATTTAAGAATTTGTTTTTACG
822 CTTGAAATATCTATTTTAATCTAACCAAAGCTCAACCATTTAGGATTTAAGAATTTGTTTTTACG
*
104491 AGCATCTGAATCATGGTTCGATTTAATAAAAATTAATTCGGAAAAAAAAAAAGCAACTAAGAAGC
887 AGCATCTGAATCATGGTTCGATTTAATAAAAATTAATTCGGAAAAAAAAAAAACAACTAAGAAGC
104556 GTGAAAAGGCCTTCAGATCTTTTTGGCTT
952 GTGAAAAGGCCTTCAGATCTTTTTGGCTT
104585 TGAATTATATA-TTTTAATGAG--TTGTGGC-AAAAA
1 TGAATTATATATTTTTAATGAGTATTGTGGCTAAAAA
Statistics
Matches: 934, Mismatches: 64, Indels: 54
0.89 0.06 0.05
Matches are distributed among these distances:
987 6 0.01
988 73 0.08
989 15 0.02
990 45 0.05
991 27 0.03
992 4 0.00
993 167 0.18
994 15 0.02
995 281 0.30
996 5 0.01
997 136 0.15
998 5 0.01
999 37 0.04
1000 108 0.12
1001 10 0.01
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (980 bp):
TGAATTATATATTTTTAATGAGTATTGTGGCTAAAAATTATGGAAAAATATTTCGGGTCAATTTT
AGCAAAATTGTAGCCAAAATCGTGTAACATCACGGTTTTTGGCTAAAAACACGTTCCGGGGACCC
AGCTCAATTTTGCATGATTTTTGGCACCATGACTCCTTGAAATATCTATTTTAATCTAACCAAAT
CTCAACCATTTAGGATTTAAGGATTTATTTTTACGAGCATCCGAATCATGGTTCGATTTAATAAA
AAATTAATTCGGAAAAAAAAAGAAAAACAACTAAGAAGCGTGAAAAGACCTTCAGACTTTTTGGC
TTTGAATTAGATATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTCGGATCAATT
TTTGCAAAATTGTAGCCGAAATCGTGTCTAACATCACGGTTTTTGACTAAAAACGCGATTCGGGG
ACCCCGCTCAATTTTGAATGACTGTTGGCGCCATGACTCCTTGAAATATATATTTTTATCTAACC
AAATCTCAACCACATTGGATTTAAGGATTTGTTTTTAAGAGCATCAGAATCATGGTTCGATTTAA
AAAAATTAATTCCGAAAAAGAAAGAAAACAACCAAGAAGCCTGAAAAGACCTTCAGTCTTTTTGG
CTTTAAATTAGATATTCTTTATGAGTATTGTGGCAAAGAATTAAGGAAAAATCTTTCGGGTCAAT
ATTTGCAAAATTGTAGCCGAAATCGTGTACTAACCATCACGGTTTATGGCTAAAAACACGTTCCG
GGGACCCGGATCATTTTGAATGATTTTTGACACCATGACTCCTTGAAATATCTATTTTAATCTAA
CCAAAGCTCAACCATTTAGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCATGGTTCGATTT
AATAAAAATTAATTCGGAAAAAAAAAAAACAACTAAGAAGCGTGAAAAGGCCTTCAGATCTTTTT
GGCTT
Done.