Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016494.1 Corchorus olitorius cultivar O-4 contig16527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28645

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124--197
29
2.5
30
84
4
96
44
13
17
24
1.85
1780--1811
2
16.5
2
93
6
57
53
0
0
46
1.00
2048--2119
31
2.3
30
76
19
76
26
4
9
59
1.47
2372--2418
13
3.8
12
78
13
51
40
0
4
55
1.19
2545--2608
17
4.1
17
75
19
75
28
50
20
1
1.58
2545--2608
23
2.8
22
81
9
83
28
50
20
1
1.58
2544--2609
29
2.3
29
91
0
105
30
48
19
1
1.58
2599--2702
16
6.6
16
77
10
115
37
40
14
7
1.75
2544--2609
6
11.3
6
78
12
75
30
48
19
1
1.58
2599--2702
32
3.3
32
86
4
149
37
40
14
7
1.75
3476--3515
15
2.4
17
80
20
57
20
35
10
35
1.86
3484--3515
15
2.1
15
100
0
64
25
31
9
34
1.87
3484--3526
15
2.9
15
89
0
50
25
30
11
32
1.91
13413--13460
18
2.5
20
83
16
66
35
4
0
60
1.16
16947--17002
13
4.5
13
82
8
80
51
8
8
30
1.64
19550--19581
16
2.0
16
100
0
64
31
12
12
43
1.80
19722--19769
21
2.1
22
77
14
53
50
2
4
43
1.33
21041--21074
16
2.1
16
94
0
59
52
17
2
26
1.58
21308--21352
24
1.9
23
86
4
63
55
13
8
22
1.65
25647--25742
27
3.6
26
77
12
79
35
25
19
19
1.96

Tables:   1

The End!