Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016496.1 Corchorus olitorius cultivar O-4 contig16529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116013

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15183--15411
114
2.0
115
89
1
352
41
6
13
37
1.71
27474--27520
15
3.1
15
93
0
76
17
36
8
38
1.80
38430--38464
11
3.2
11
87
0
52
80
14
2
2
0.95
52065--52120
29
1.9
29
85
0
76
37
16
17
28
1.91
76463--76552
45
2.0
45
95
0
162
45
7
13
33
1.72
78331--78364
18
1.9
18
94
5
61
52
11
8
26
1.67
97888--97932
14
3.2
15
78
12
51
20
35
4
40
1.72
105676--105749
31
2.5
31
84
4
98
31
24
9
35
1.87
105827--105872
22
2.1
22
100
0
92
8
28
17
45
1.78
106867--106892
13
2.0
13
100
0
52
61
23
15
0
1.33
108730--109059
178
1.9
178
88
2
511
34
13
15
35
1.88

Tables:   1

The End!