Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016497.1 Corchorus olitorius cultivar O-4 contig16530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29417

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3182--3231
24
2.1
24
100
0
100
30
4
16
50
1.63
3175--3255
24
3.0
27
80
15
96
33
3
16
46
1.64
6215--6244
12
2.5
12
88
0
51
40
16
36
6
1.75
7170--7194
1
25.0
1
100
0
50
0
0
0
100
0.00
8048--8112
33
2.0
33
84
6
87
46
10
1
41
1.48
10032--10064
9
3.7
9
91
0
57
36
30
0
33
1.58
11953--12530
22
26.2
22
69
16
197
35
15
9
38
1.81
12098--12183
45
1.9
45
80
4
102
37
16
12
33
1.87
12231--12362
46
2.9
46
92
2
205
37
15
9
37
1.81
12342--12403
31
2.0
31
90
3
97
43
11
4
40
1.62
12416--13053
44
14.8
44
65
15
131
36
16
8
38
1.80
12640--13058
22
18.9
22
71
12
241
35
16
9
39
1.80
12907--13290
66
5.6
67
70
11
226
39
17
7
35
1.79
13139--13290
22
6.9
22
72
10
89
40
17
7
35
1.77
16394--16441
6
8.3
6
83
4
55
47
18
2
31
1.60
17447--17486
17
2.2
20
86
13
59
45
0
20
35
1.51
25087--25170
42
2.0
42
92
0
141
50
14
5
29
1.66
25478--25503
13
2.0
13
100
0
52
30
15
7
46
1.74

Tables:   1

The End!