Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016498.1 Corchorus olitorius cultivar O-4 contig16531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72925

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
657--685
14
2.1
14
100
0
58
27
0
13
58
1.36
670--768
52
1.9
52
93
0
171
34
6
12
47
1.65
5326--5450
63
2.0
63
96
0
232
28
24
13
33
1.93
6283--6327
2
22.0
2
95
4
81
48
2
0
48
1.13
6995--7025
8
3.9
8
100
0
62
25
35
0
38
1.56
7734--7849
57
2.0
57
95
3
207
32
25
1
39
1.66
8330--8396
21
3.2
21
68
16
66
29
5
13
50
1.65
8330--8409
42
1.9
42
97
0
151
31
7
13
47
1.71
9300--9349
24
2.1
24
100
0
100
56
16
4
24
1.57
11257--11294
15
2.4
17
83
16
55
39
0
2
57
1.12
11637--14178
661
3.8
664
83
4
2898
33
14
15
36
1.89
11637--14183
331
7.6
329
81
4
2704
32
14
15
36
1.88
17299--17339
17
2.4
17
91
0
73
36
2
0
60
1.10
18593--18624
16
2.1
15
94
5
55
34
0
6
59
1.23
21492--21527
17
2.1
17
100
0
72
11
25
0
63
1.27
28116--28264
75
2.0
75
93
0
253
40
16
9
33
1.80
29825--29882
29
2.0
28
83
9
73
25
13
5
55
1.59
32780--32817
16
2.3
16
90
4
58
7
28
26
36
1.84
34338--34365
2
14.0
2
100
0
56
50
0
0
50
1.00
35083--35118
16
2.2
16
95
0
63
61
5
8
25
1.46
38502--39086
322
1.8
315
80
8
701
32
15
16
35
1.90
43336--43374
20
2.0
20
94
0
69
38
0
5
56
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44634--44670
19
2.0
19
94
5
67
67
0
0
32
0.91
51582--51660
40
2.0
40
89
0
122
43
13
12
30
1.82
64541--64565
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!