Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01000165.1 Corchorus olitorius cultivar O-4 contig00165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18063

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3091--3124
13
2.6
13
90
0
50
35
0
35
29
1.58
3856--3920
28
2.3
28
94
0
112
18
27
27
26
1.98
4540--4569
2
15.0
2
100
0
60
50
0
0
50
1.00
4981--5037
16
3.6
15
76
9
60
5
15
43
35
1.70
4984--5045
32
1.9
32
93
6
108
6
16
40
37
1.74
4994--5050
16
3.6
16
79
9
71
5
15
38
40
1.70
5152--5186
3
11.7
3
100
0
70
34
0
0
65
0.93
5184--5217
2
17.0
2
100
0
68
50
0
0
50
1.00
7034--7087
27
2.0
27
92
0
90
37
11
12
38
1.79
7260--7307
5
9.2
5
78
17
53
58
4
0
37
1.18
7258--7307
21
2.4
21
83
9
66
58
4
0
38
1.17
7250--7286
16
2.3
15
90
9
56
59
0
2
37
1.12
14092--14132
20
2.0
20
100
0
82
36
9
34
19
1.85

Tables:   1

The End!