Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016500.1 Corchorus olitorius cultivar O-4 contig16533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7290
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:4356 original size:2 final size:2

Alignment explanation


    Indices: 4349--4373  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       4339 TCAATCAAAT

                                                 
       4349 AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC A

       4374 GAGCAGACAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.