Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016502.1 Corchorus olitorius cultivar O-4 contig16535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17003
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30


Found at i:8882 original size:1 final size:1

Alignment explanation


    Indices: 8876--8901  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       8866 ATTCAGCAGG

                                      
       8876 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

       8902 AAAATTTTAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:16979 original size:2 final size:2

Alignment explanation


    Indices: 16972--17002  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

      16962 CATGGAAACC

                                                          
      16972 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

      17003 A


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Done.