Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016503.1 Corchorus olitorius cultivar O-4 contig16536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149924

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3201--3283
33
2.5
33
94
3
141
60
12
4
22
1.51
19544--19709
60
2.8
58
79
8
181
26
17
20
35
1.95
20129--20189
32
1.9
31
90
3
95
44
11
16
27
1.82
31446--31521
29
2.5
31
78
6
84
28
28
13
28
1.94
31420--31646
113
2.0
113
94
0
400
30
25
15
28
1.96
44505--44583
24
3.3
24
90
0
131
32
7
12
46
1.70
45942--45979
19
2.0
20
89
5
60
23
5
0
71
1.07
48421--48481
21
3.0
20
86
6
88
32
19
11
36
1.88
48857--48894
3
12.7
3
94
0
67
63
0
0
36
0.95
52213--52260
2
23.0
2
91
8
78
47
2
2
47
1.25
52200--52259
16
3.5
17
88
6
86
46
3
5
45
1.41
54517--54549
16
1.9
18
88
11
52
72
0
15
12
1.12
54599--54636
19
2.0
19
94
0
67
52
0
23
23
1.47
60076--60238
83
1.9
87
86
6
235
31
20
21
26
1.98
79124--79198
38
2.0
38
94
0
132
20
21
30
28
1.98
84388--84427
3
13.3
3
100
0
80
67
0
0
32
0.91
100198--100245
23
2.2
21
88
7
69
6
22
0
70
1.09
106426--106451
9
2.9
9
100
0
52
23
0
65
11
1.25
106433--106740
60
5.1
60
89
0
411
24
9
39
26
1.85
116835--116876
6
7.0
6
100
0
84
16
33
16
33
1.92
124260--124477
109
2.0
109
86
1
303
31
14
16
37
1.89
136209--136264
19
2.8
20
89
5
87
35
10
21
32
1.88

Tables:   1

The End!