Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016504.1 Corchorus olitorius cultivar O-4 contig16537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16285

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--47
2
14.5
2
100
0
58
0
48
0
51
1.00
982--1442
61
8.2
58
76
19
389
7
32
24
35
1.83
1031--1176
46
3.1
46
80
10
170
4
34
23
38
1.74
1046--1205
49
3.3
49
86
6
202
6
32
23
37
1.80
1090--1205
49
2.3
49
94
2
205
7
32
25
34
1.84
1212--1446
51
4.5
51
82
11
303
7
32
24
35
1.84
1141--1276
71
1.9
71
95
0
245
8
31
24
35
1.86
2281--7726
637
8.5
631
84
6
5783
33
13
17
34
1.90
2281--7726
969
5.7
960
83
7
6139
33
13
17
34
1.90
2281--7726
320
17.0
321
80
7
5930
33
13
17
34
1.90
7637--7830
104
1.9
104
86
0
280
27
18
18
36
1.94
7310--8149
423
2.0
424
91
1
1371
32
14
17
35
1.90
8362--11251
321
9.1
320
79
9
3058
34
13
17
34
1.89
11257--12502
322
3.9
316
79
8
1255
32
14
17
34
1.90
13582--13653
30
2.4
30
92
0
117
25
25
2
47
1.65

Tables:   1

The End!