genome.fa.s16505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016505.1 Corchorus olitorius cultivar O-4 contig16538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87138

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2567--2618	24	2.2	24	86	6	72	5	19	19	55	1.62
11838--12086	123	2.0	123	98	0	480	31	23	20	24	1.98
13439--13557	60	2.0	60	98	0	229	18	32	15	33	1.92
20745--20783	13	3.0	13	85	7	53	51	23	10	15	1.73
20734--20779	13	3.3	13	82	11	56	43	28	10	17	1.82
31656--31830	87	2.0	87	98	0	341	28	32	21	18	1.97
32197--32257	32	1.9	32	83	6	79	22	8	4	63	1.41
34025--34055	16	1.9	16	93	0	53	35	6	32	25	1.82
45038--45064	2	13.5	2	100	0	54	51	0	0	48	1.00
59902--59997	44	2.2	44	100	0	192	38	23	4	33	1.74
64038--64154	30	3.9	30	82	3	137	19	20	22	37	1.94
65149--65222	31	2.4	31	84	4	96	35	10	21	32	1.88
68050--68162	47	2.4	47	93	0	199	46	11	27	14	1.78
68030--68149	47	2.8	44	84	12	167	43	14	25	16	1.86
71735--71802	30	2.3	30	100	0	136	19	26	5	48	1.71
75303--75366	29	2.2	30	88	2	94	29	9	25	35	1.87
78132--78179	18	2.7	18	81	12	55	52	2	2	43	1.24
78320--78369	25	2.0	24	84	3	64	34	4	6	56	1.43
78295--78474	97	1.8	99	85	4	258	32	6	6	55	1.49
78518--79702	331	3.6	327	82	6	1380	32	14	16	35	1.90
80083--80132	21	2.4	21	86	0	73	30	20	10	40	1.85
81100--81156	31	1.9	31	85	7	82	33	12	22	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83615--83681	15	4.7	15	71	17	61	13	5	19	61	1.52

Tables:   1

The End!