Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016506.1 Corchorus olitorius cultivar O-4 contig16539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9745
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Found at i:1347 original size:332 final size:331
Alignment explanation
Indices: 14--2738 Score: 1870
Period size: 332 Copynumber: 8.2 Consensus size: 331
4 TTCTTAATTC
* * * * * * *
14 CAATGTAGCTGAGATTTGATTAGATGAATATGGATATCTGAAAGAGTTTTGGCGCCAAAAATCAT
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
* ** *
79 GCAAAACTTAGTTGAGGCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTT
66 GCAAAACTGACCTG-GGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTT
* * * * * * * * ***
144 CGGCTAGAATTTCGCAAAAATGGACTCGAAAGTTATTTTCTCTAGTTTTAGCCGCAATACTCAGT
130 CGGCTAAAATTTTGCAAAAATTGAC-CGAAAGATATTTCCTCAATTTTTTGCTAAAATACTCA-T
* * * * * *
209 --AAAAT-CATATAATTCAACGCCAAAAATATTGAAGGGTTTTTCATGCTTCTAGTATAGTTTTT
193 AAAAAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTT
* * * * * * ***
271 CCTATTATTTT-CAAGATTAATTTCTTATTAAATTGAAACATGATTCAGATGCTTGT-TTTACAA
258 CATATT-TTTTCCGA-ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
*
334 ATCCTTAAATC
321 ATCCTTAAATG
* * * * * * * *
345 CATTATGGATGAGATTTGGTTAGATTAATATAGATATTTCAAGGATTCTCGGTGCAAAAAATCAT
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
* * * **
410 GCAACACTGAACCGGGGCCCCAGAAGGCCGGAACACGTTTTTTAGGGGAAAAAAACCGTGATTTC
66 GCAAAACTG-ACCTGGG-CCC-G-A------AACGCG-TTTTTA---GCCAAAAACCGTGA--T-
* * * ** *
475 GACTAACGTACACAATTTCGGCTACTATTTTGCAAAAATTGAAC-AGAA-ATAGTTTACCTCAAT
114 GA-TTA-TTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCGA-AAGATA-TTT-CCTCAAT
* * * * * *
538 TTTTTTCGAAAATACCCATAAAATATATATATAATTCAACTCCAAAAATATT-AGAGGGC-TTTC
174 TTTTTGCTAAAATACTCATAAAAAATATATATAATTCAACGCCAAAAAGATTGA-AGGGCTTTTC
* * * *
601 ACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAATTAAAATT-TAATTAAATCGAAATAAGATT
238 ACGCTTCTAATATCGTTTTTCATATTTTTTCCGAATT-AATTTCTAATTAAATCGAAACAAGATT
*
664 TAGATGCTCGT-AAAACAAA-CCTTTAAATG
302 CAGATGCTCGTAAAAACAAATCC-TTAAATG
* ** * ***
693 CAATGTGGCTGAGATTTGATTAGATGAATATATATATTTCACTGAGCCTCAATGCCAAAAAATCA
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCC-AAAAATCA
* * * * * ** * *
758 TACAAAATTGAGCCGGGGCCCCGAAACCCGTTTTTAGCAAAAAAAAAATTGTGATGATTAGTAAA
65 TGCAAAACTGA-CCTGGG-CCCGAAACGCGTTTTTAGC----CAAAAACCGTGATGATTATTACA
* * * * * * **
823 CGAGTTCGCCTAAAATTTTACAAAAA-AGACC-AAAAATTTTTCCTCAATTTTCGGCTAAAATAC
124 CGATTTCGGCTAAAATTTTGCAAAAATTGACCGAAAGATATTTCCTCAATTTTTTGCTAAAATAC
* * * * * * *
886 TCAT--GAAATACATATAATTTAACGCCAAAAAGATT-AGAGGACGTTTT-ACGATTTTCATATC
189 TCATAAAAAATATATATAATTCAACGCCAAAAAGATTGA-AGGGC-TTTTCACGCTTCTAATATC
* * *
947 GTTTTTCATAATTTTTTCTGAATTAATTTCTAATTTAATCGAAATAAGATTCAGATGCTCGTAAA
252 GTTTTTCAT-ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
1012 AACAAATCCTTAAATG
316 AACAAATCCTTAAATG
* * * * ** **
1028 CAATGTGTCTGAAATTTGATTAGATGAATATGGATATCTCAACTAGTCTTAGCGCCAAAAATCAT
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
* * * * *
1093 GCAAAACTAACCCAGGGCCTTGAAACGCATTTTTAGCCAAAAACCGTGACGATTATTACACGATT
66 GCAAAACTGA-CCTGGGCC-CGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATT
*
1158 TCGGCTAAAATTTTGCAAAAATTGACCGGAAAGATATTTCCTCAATTTTTTGCTAAATTA-TCAT
129 TCGGCTAAAATTTTGCAAAAATTGACC-GAAAGATATTTCCTCAATTTTTTGCTAAAATACTCAT
** * ** * *
1222 AAAAAATA-ATATAATTCTGC-CCAAAAAATATTGAAGGATTTTTTACGATTCTAATATCGTTTT
193 AAAAAATATATATAATTCAACGCC-AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
* * * * *
1285 TCCTACTATTTCCGAATTAATTTCTAATTAAATCGAAACATGATTTAGATGCTCGTAAAAACAAA
257 TCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
*
1350 TCCTTAAATC
322 TCCTTAAATG
* * * * * *
1360 CAATATGACTGAGATTTGATTAGTTTAATATAAATAGTTT-AAGGAGTCTTGGCGCCAAAAATCA
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATA-TTTCAAGGAGTCTCGGCGCCAAAAATCA
* * * * * *** * *
1424 TGCAATACTGACCCGGGGTCCTGCAACGCGTTTTTAGCAAAAAAAAAAATCG-TGA-TGTTGCAC
65 TGCAAAACTGA-CCTGGG-CCCGAAACGCGTTTTTAGC--CAAAAACCGT-GATGATTATTACAC
* * * * * *
1487 GATTTCAGCTAATATTTTGCAAAAAATGACCCAAA-ATATTTTTCCTCAATTTTTAG-TCACAAT
125 GATTTCGGCTAAAATTTTGCAAAAATTGACCGAAAGATA--TTTCCTCAATTTTTTGCT-AAAAT
* * * *
1550 ACTC--AGAAAA-ATATATAATTCAACGCCAAAAAGATTAAAGGGTTTTTCACGCTTCTAATACC
187 ACTCATAAAAAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATC
* * * * * *
1612 ATTTTTCCTA-TTTTTCCGAATTAATTTCTAATTAAA--AAAACATGATTCAAATGCT--T-ATA
252 GTTTTTCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
1671 A-AAA--C---AATG
317 ACAAATCCTTAAATG
* * *
1680 --A-----CTGGGATTTGATTAGATGAATATAGACATTTCCAGGAGTCTCGGCGCCAAAAATCAT
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
* * * * *
1738 TCAAATA-TGA--TGGGCTTCGAAATGCGTTTTTAGCCAAAAACCGTGATGGTTATTAAACGATT
66 GCAAA-ACTGACCTGGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATT
** * * * * *
1800 TCAACTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTTAGCCATAATATTCAT
129 TCGGCTAAAATTTTGCAAAAATTGA-CCGAAAGATATTTCCTCAATTTTTTGCTAAAATACTCAT
* * *
1865 AAAAAA-ATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTGACGCTTTTAATATTGTTTTT
193 AAAAAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTT
** * *
1929 CATATTTTTTCTAAATTAATTTTTAATTAAATCGAAACATA-ATTCAGATGCTCATTAAAAACAA
258 CATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACA-AGATTCAGATGCTC-GTAAAAAC--
*
1993 AAAACAAAAATCTTAAATG
319 AAATC------CTTAAATG
* * * * *
2012 CAATGTGGCTAAGATTTTATTAGATGAATATAGTTATTTCAAGGAGTGTCGGTGCCAAAAATCAT
1 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
** * * * *
2077 GCAAAACTGAGTTTGTGCCCCGAAACGCGTTTTTAGCAAAAAACCGTGATG-GT-GTACACGATT
66 GCAAAACTGA-CCTG-GGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATT
* * * * * * *
2140 TTGACTAAGATTTTGC-AAAATGTAACCCGAAAAATTTTTCCTCAATTTTTTGATAAAATACTCC
129 TCGGCTAAAATTTTGCAAAAAT-TGA-CCGAAAGATATTTCCTCAATTTTTTGCTAAAATACT-C
* * * * * * *
2204 TAAAATATATATATATATATATAATTTAATGGCAAAAAGATTGAAGGACTTTTCACGCTTTTGAT
191 ----ATA-A-A-AAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* * * * * *
2269 ATCGTTTTTCATA-TTTTTCTGTATTGATTTCTAATTAAATCGAAACAAGATTTAAATGCTTGTA
249 ATCGTTTTTCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTA
** *
2333 AAAACAAATTTTTAAATC
314 AAAACAAATCCTTAAATG
* * * ****
2351 CAATGTGGCTCTA-ATTTGATTAGATGAGTATAGATATATATCTTAAGGATTCTTATTGCCAAAA
1 CAATGTGGCT-GAGATTTGATTAGATGAATATAGATAT-T-TC--AAGGAGTCTCGGCGCCAAAA
** * * * * ** *
2415 ATCATG-AAAACTGAATTTGGGCAACAAAACGCTTTTTTATCCAAAAACTATGATGGTTATTACA
61 ATCATGCAAAACTG-ACCTGGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACA
* * *
2479 CGATTTCGTCTAAAATTTTGTAAAAATTGATCCTAAAGATATTTCCTCAA-TTTTTGACTAAAAT
124 CGATTTCGGCTAAAATTTTGCAAAAATTGA-CCGAAAGATATTTCCTCAATTTTTTG-CTAAAAT
* * * * * *
2543 ACTCAT-AAAAAT-TATATAACTCAACGGCAAAAAAATTGAAGGGCTTTTGACGTTTCAAATATC
187 ACTCATAAAAAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATC
* * * * * * * * * *
2606 GTTTTTCCTATTTTTTACAAATTAATTTATAATTATATTGAAACAAAATTCAAATGCTCATAAAG
252 GTTTTTCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
* *
2671 GCAAATCTTTAAAT-
317 ACAAATCCTTAAATG
* * *
2685 CTAATGTGGGTGAGATTTGATTAGATGGATATAGATATATTTCAAGTAGTCTCG
1 C-AATGTGGCTGAGATTTGATTAGATGAATATAG--ATATTTCAAGGAGTCTCG
2739 AAGCTAGAAA
Statistics
Matches: 1893, Mismatches: 367, Indels: 266
0.75 0.15 0.11
Matches are distributed among these distances:
307 1 0.00
308 8 0.00
309 55 0.03
310 22 0.01
311 62 0.03
312 26 0.01
313 52 0.03
314 16 0.01
317 1 0.00
318 4 0.00
320 3 0.00
321 3 0.00
323 1 0.00
325 3 0.00
326 3 0.00
327 1 0.00
329 17 0.01
330 40 0.02
331 123 0.06
332 240 0.13
333 165 0.09
334 151 0.08
335 150 0.08
336 28 0.01
337 8 0.00
338 3 0.00
339 101 0.05
340 65 0.03
341 27 0.01
342 67 0.04
343 32 0.02
344 60 0.03
345 11 0.01
346 2 0.00
347 17 0.01
348 139 0.07
349 131 0.07
350 28 0.01
351 27 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (331 bp):
CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
GCAAAACTGACCTGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTC
GGCTAAAATTTTGCAAAAATTGACCGAAAGATATTTCCTCAATTTTTTGCTAAAATACTCATAAA
AAATATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAT
ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
TAAATG
Found at i:4598 original size:20 final size:20
Alignment explanation
Indices: 4565--4921 Score: 246
Period size: 20 Copynumber: 17.4 Consensus size: 20
4555 TACGCAGCAC
*
4565 ATTCACATTTAACTTTCCCA
1 ATTCACATTCAACTTTCCCA
* * * *
4585 ATTGACATTGAACTTGCCTTA
1 ATTCACATTCAACTTTCC-CA
* *
4606 ATTCACATTCAAGTTTTCCA
1 ATTCACATTCAACTTTCCCA
* * * **
4626 ATTGACATTGAACTTGCCTTG
1 ATTCACATTCAACTTTCC-CA
4647 ATTCACATTCAACTTTCCCA
1 ATTCACATTCAACTTTCCCA
* * * **
4667 ATTGACATTGAACTTGCCTTG
1 ATTCACATTCAACTTTCC-CA
4688 ATTCACATTCAACTTTCCCA
1 ATTCACATTCAACTTTCCCA
* * * **
4708 ATTGACATTGAACTTGCCTT
1 ATTCACATTCAACTTTCCCA
*
4728 ATTCACAATCAACTTTCCCAA
1 ATTCACATTCAACTTTCCC-A
*
4749 TATTCACATTCAAATTTCCCA
1 -ATTCACATTCAACTTTCCCA
* * * * **
4770 AATGACATTGAACTTGCCTTG
1 ATTCACATTCAACTTTCC-CA
4791 ATTCACACTTCAACTTTCCCA
1 ATTCACA-TTCAACTTTCCCA
* * **
4812 ATTCACATTGAACTTGCCTT
1 ATTCACATTCAACTTTCCCA
* *
4832 ATCCACATTCAACTTTCCTA
1 ATTCACATTCAACTTTCCCA
* * **
4852 ATTCACATTGAACTTGCCTT
1 ATTCACATTCAACTTTCCCA
*
4872 ATTCACATTCAACTTCCCCA
1 ATTCACATTCAACTTTCCCA
* * *
4892 ATTCACATTGAACTTGCCTTA
1 ATTCACATTCAACTTTCC-CA
4913 ATTCACATT
1 ATTCACATT
4922 GGCCCTCAAT
Statistics
Matches: 252, Mismatches: 77, Indels: 15
0.73 0.22 0.04
Matches are distributed among these distances:
20 159 0.63
21 67 0.27
22 26 0.10
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (20 bp):
ATTCACATTCAACTTTCCCA
Found at i:4627 original size:41 final size:41
Alignment explanation
Indices: 4565--4749 Score: 318
Period size: 41 Copynumber: 4.5 Consensus size: 41
4555 TACGCAGCAC
* *
4565 ATTCACATTTAACTTTCCCAATTGACATTGAACTTGCCTTA
1 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
* *
4606 ATTCACATTCAAGTTTTCCAATTGACATTGAACTTGCCTTG
1 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
4647 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
1 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
4688 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTT-
1 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
*
4728 ATTCACAATCAACTTTCCCAAT
1 ATTCACATTCAACTTTCCCAAT
4750 ATTCACATTC
Statistics
Matches: 137, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 21 0.15
41 116 0.85
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (41 bp):
ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTG
Found at i:4753 original size:22 final size:22
Alignment explanation
Indices: 4727--4770 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4717 GAACTTGCCT
*
4727 TATTCACAATCAACTTTCCCAA
1 TATTCACAATCAAATTTCCCAA
*
4749 TATTCACATTCAAATTTCCCAA
1 TATTCACAATCAAATTTCCCAA
4771 ATGACATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.34
Consensus pattern (22 bp):
TATTCACAATCAAATTTCCCAA
Found at i:4778 original size:82 final size:82
Alignment explanation
Indices: 4565--4784 Score: 237
Period size: 82 Copynumber: 2.7 Consensus size: 82
4555 TACGCAGCAC
* * * * * * * * *
4565 ATTCACATTTAACTTTCCCAATTGACATTGAACTTGCCTTAATTCACATTCAAGTTTTCCAATTG
1 ATTCACAATCAACTTTCCCAATTCACATTCAAATTGCCTCAAATCACATTCAACTTTCCCAATTG
4630 ACATTGAACTTGCCTTG
66 ACATTGAACTTGCCTTG
* * * * ** *
4647 ATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTGATTCACATTCAACTTTCCCAATTG
1 ATTCACAATCAACTTTCCCAATTCACATTCAAATTGCCTCAAATCACATTCAACTTTCCCAATTG
4712 ACATTGAACTTGCCTT-
66 ACATTGAACTTGCCTTG
* * *
4728 ATTCACAATCAACTTTCCCAATATTCACATTCAAATTTCC-CAAATGACATTGAACTT
1 ATTCACAATCAACTTTCCC-A-ATTCACATTCAAATTGCCTCAAATCACATTCAACTT
4785 GCCTTGATTC
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 18 0.15
82 90 0.74
83 14 0.11
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (82 bp):
ATTCACAATCAACTTTCCCAATTCACATTCAAATTGCCTCAAATCACATTCAACTTTCCCAATTG
ACATTGAACTTGCCTTG
Found at i:4796 original size:144 final size:142
Alignment explanation
Indices: 4605--4900 Score: 477
Period size: 144 Copynumber: 2.1 Consensus size: 142
4595 AACTTGCCTT
* * *
4605 AATTCACATTCAAGTTTTCCAATTGACATTGAACTTGCCTTGATTCACA-TTCAACTTTCCCAAT
1 AATTCACATTCAAATTTCCCAAATGACATTGAACTTGCCTTGATTCACACTTCAACTTTCCCAAT
* * *
4669 TGACATTGAACTTGCCTTGATTCACATTCAACTTTCCCAATTGACATTGAACTTGCCTTATTCAC
66 TCACATTGAACTTGCCTT-ATCCACATTCAACTTTCCCAATTCACATTGAACTTGCCTTATTCAC
4734 AATCAACTTTCCCA
130 AATCAAC-TTCCCA
4748 ATATTCACATTCAAATTTCCCAAATGACATTGAACTTGCCTTGATTCACACTTCAACTTTCCCAA
1 A-ATTCACATTCAAATTTCCCAAATGACATTGAACTTGCCTTGATTCACACTTCAACTTTCCCAA
*
4813 TTCACATTGAACTTGCCTTATCCACATTCAACTTTCCTAATTCACATTGAACTTGCCTTATTCAC
65 TTCACATTGAACTTGCCTTATCCACATTCAACTTTCCCAATTCACATTGAACTTGCCTTATTCAC
* *
4878 ATTCAACTTCCCC
130 AATCAACTTCCCA
4891 AATTCACATT
1 AATTCACATT
4901 GAACTTGCCT
Statistics
Matches: 142, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
142 9 0.06
143 7 0.05
144 94 0.66
145 32 0.23
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.36
Consensus pattern (142 bp):
AATTCACATTCAAATTTCCCAAATGACATTGAACTTGCCTTGATTCACACTTCAACTTTCCCAAT
TCACATTGAACTTGCCTTATCCACATTCAACTTTCCCAATTCACATTGAACTTGCCTTATTCACA
ATCAACTTCCCA
Found at i:5738 original size:41 final size:41
Alignment explanation
Indices: 5686--5770 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
5676 GAGTGAAAAG
*
5686 AGATGCGATATAACCAAAACAGTCTTGATGC-GCGAGTGAGA
1 AGATGCAATATAACCAAAACAGTCTTGATGCAG-GAGTGAGA
5727 AGATGCAATATAACCAAAACAGTCTTGATGCAGGAGTGAGA
1 AGATGCAATATAACCAAAACAGTCTTGATGCAGGAGTGAGA
5768 AGA
1 AGA
5771 GACGCGATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 41 0.98
42 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (41 bp):
AGATGCAATATAACCAAAACAGTCTTGATGCAGGAGTGAGA
Done.