Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016508.1 Corchorus olitorius cultivar O-4 contig16541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66458

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3552--3601
25
2.0
25
96
0
91
26
32
22
20
1.98
3652--3862
70
3.0
70
92
2
361
32
23
14
29
1.94
14333--14412
22
3.7
21
80
8
88
35
12
11
41
1.79
17618--17672
27
2.0
28
89
10
87
58
3
23
14
1.52
24533--24567
17
2.1
17
94
0
61
22
51
22
2
1.61
24998--25069
31
2.3
30
75
17
76
26
2
8
62
1.37
25469--25512
17
2.6
17
79
10
54
27
40
20
11
1.86
25504--25594
16
5.8
16
73
11
71
42
35
12
9
1.75
25504--25592
32
2.8
32
81
3
108
41
35
12
10
1.76
49597--49686
45
2.0
45
95
0
162
32
6
2
58
1.36
66358--66458
33
3.1
33
89
2
141
12
35
29
21
1.91

Tables:   1

The End!