Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016510.1 Corchorus olitorius cultivar O-4 contig16543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34869
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Found at i:1252 original size:648 final size:643
Alignment explanation
Indices: 1--2019 Score: 2268
Period size: 648 Copynumber: 3.1 Consensus size: 643
*
1 TCGTTTTCCTATTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAATGTTTGTAA
1 TCGTTTTTCTATTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAATGTTTGTAA
** * * *
66 AAATGATGGTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGTGCCAAAAATCA
66 AAAAAATGGTTGAGATTTGGTTAGATGAATATGGATATTTCAAGGAGTCTTGGTGTCAAAAATCA
* ** **
131 TTCAAAATTGAACTGGGCCCTGGAACGCGTTTTTAGCCAAAAATCGTGATGATTATTACACAATT
131 TTCAAAATTGAACCGGGCCCTCAAACATGTTTTTAGCCAAAAATCGTGATGATTATTACACAATT
* *
196 TCAGTTAAAATTTTGCAAAAAATTTGACCCGAAAGATATCTCCTCAATTTTTAGCCATAATACTC
196 TCGGCTAAAATTTTGC--AAAA-TTGACCCGAAAGATATCTCCTCAATTTTTAGCCATAATACTC
* *
261 ATAAAAAACTATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCATTTT
258 ATAAAAAA-TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
326 TCATATTTTTT-TG-A-TAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
322 TCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAA
* *
388 TCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATGTAGATATTTCAAGGAG-CGTCGACA
387 TCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTC-TCGGCA
* * * *
452 TCAAAAACCATTCAAAACTGAGCTGGGGCCCTGAAACGTGTTTTTAGCAAAAAAACAGTGAT-G-
451 CCAAAAACCATGCAAAACTGAGC-GGGGCCC-GAAACGCGTTTTTAG-ACAAAAACAGTGATGGT
* * * *
515 -GTTAGTACACGATTTCGGCTAAAAATTTACAGAAAATGACCAGAAAAATATTCTCTCAATTTTT
513 TGTTAGTACACGATTTCGGCTAAAAATTTGCAAAAAATGACC-GAAAAATTTTCTCCCAA-TTTT
* * * * * *
579 AGCCACAATACTCATAAAAAATATATAATTCGATGCCAAAAAAATTGAAGGGCTTTTCACGCTTC
576 GGCTAAAATAC-CAT-AAAAATATATAATTCAATGCCAAAAAAATTGGAGGGCTTTTCACGCTTT
644 TAATA
639 TAATA
*
649 TCGTTTTTCTTTTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAATGTTTGTAA
1 TCGTTTTTCTATTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAATGTTTGTAA
* * *
714 AAAAAATGGTTGGGATTTGGTTAGATGAATATGGATATTTCAAGGAGTCTTAGTGTCAATAATCA
66 AAAAAATGGTTGAGATTTGGTTAGATGAATATGGATATTTCAAGGAGTCTTGGTGTCAAAAATCA
*
779 TTCAAAATTGAACCGGGCCCTCAAACATGTTTTTAGCCAAAAATCGTGATGATTATTACACGATT
131 TTCAAAATTGAACCGGGCCCTCAAACATGTTTTTAGCCAAAAATCGTGATGATTATTACACAATT
* *
844 TCGGCTAAAATTTTGCAAAACTTGACCCGAAAGATAACTCCTCAATTTTTAGTCATAATACTCAT
196 TCGGCTAAAATTTTGCAAAA-TTGACCCGAAAGATATCTCCTCAATTTTTAGCCATAATACTCAT
* *
909 AAAAAATATATAATTTAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTGTAATATCGTTTTTCA
260 AAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCA
*
974 TATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAAAAACAAATCC
325 TATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCC
* * * *
1039 TTAAATGCAATGTGGCTAAAATTTTCTTAGATGAATATAGATATTTCAAGGAGTTTCGGCACCAG
390 TTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTCTCGGCACCAA
*
1104 AAACCATGCAAAACTGAGTCGGGGCCTCGAAACGCGTTTTTAGACAAAAACCGTGATGGTTAGTT
455 AAACCATGCAAAACTGAG-CGGGGCC-CGAAACGCGTTTTTAGACAAAAACAGTGATGGTT-GTT
* * * * *
1169 AGTACACAATTTTGGCTAAAAACATTGCAAAAAATGATCCGAAAAATTTTCTCCCTATTTCTGGA
517 AGTACACGATTTCGGCTAAAAA-TTTGCAAAAAATGA-CCGAAAAATTTTCTCCCAATTT-TGGC
* * * **
1234 TAAAATACTAATAATATATATATATATAATTTAATGCCAAAAATATTGGAGAACTTTTCACGCTT
579 TAAAATAC-CAT-A-A-A-A-ATATATAATTCAATGCCAAAAAAATTGGAGGGCTTTTCACGCTT
1299 TTAATA
638 TTAATA
* * * * * * * **
1305 TCATTTTTC-ATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAGGATTCAGATACTTATAA
1 TCGTTTTTCTATTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAAT-GTT-TGT
* * *
1369 AAATAAATTCTTACATGCAATGTGGCTGAGATTTGGTTAGATGAATATGGATATCTCAAGGATTT
64 AAA-AAA-----A-ATG----GT---TGAGATTTGGTTAGATGAATATGGATATTTCAAGGAGTC
** * * * ** * * *
1434 TTGGCATAAAAAATCATACAAAACTGAGTCGGAGTCC-CAGAACGCT-TTTTTAGCCAAAAAACT
115 TTGGTGTCAAAAATCATTCAAAATTGAACCGG-GCCCTCA-AAC-ATGTTTTTAGCCAAAAATC-
* * *** * * *
1497 GTGATGGTTATTACACAATTTCGGCTAAAATTTTGTACAAATTGATTAGAAAAATATTTCCACAA
176 GTGATGATTATTACACAATTTCGGCTAAAATTTTGCA-AAATTGACCCGAAAGATATCTCCTCAA
* * * * * * *
1562 TTTTTGGCTAAAATACTTCATAAAAAATATATGATTCAACGCCAAAAAGATTGAAGAGTTTTTTA
240 TTTTTAGCCATAATAC-TCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCA
* ** * *
1627 C-CTTTCTAATATCGTTTTTCCTATTTTTTCCAAATTAATTTTTAATTAAATCGAAACAAGATTC
304 CGC-TTCTAATATCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTT
* * * * * * *
1691 GGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGACTGAGATTTTATTAAATAAATTTAGATA
368 AGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATA
* ** * * * * *
1756 TTTCAAGTAGTCTCGG-AGCCAAAAATAATGCAAAATTAAGCCGGGTCCCCGGAACGCGTTGTTA
433 TTTCAAGGAGTCTCGGCA-CCAAAAACCATGCAAAACTGAG-CGGG-GCCCGAAACGCGTTTTTA
* * * * *
1820 GGCAAAAACTGTGATGATTTGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACAC-AA
495 GACAAAAACAGTGATG-GTTGTTAGTACACGATTTCGGCTAAAAATTTGCAAAAAATGAC-CGAA
* * **
1884 AAGA-TTTCTCCTCAATTTTGGCTAATATACTCATAAAAATATATAATTCAACGCCAAAATGATT
558 AA-ATTTTCTCC-CAATTTTGGCTAAAATAC-CATAAAAATATATAATTCAATGCCAAAAAAATT
* *
1948 GGAGGGCTTTTTACGTTTTTAATA
620 GGAGGGCTTTTCACGCTTTTAATA
* * *
1972 TCGTATTTCTTATTTTTTT-CTACATTAATTTCTAATTAAATCGAAACA
1 TCGTTTTTC-TATTTTTTTCCGA-ATTAATTTCTAATTAAAACGAAACA
2020 ACAGATTCTG
Statistics
Matches: 1169, Mismatches: 153, Indels: 77
0.84 0.11 0.06
Matches are distributed among these distances:
645 64 0.05
646 54 0.05
647 13 0.01
648 338 0.29
649 2 0.00
651 26 0.02
652 38 0.03
653 3 0.00
654 1 0.00
655 42 0.04
656 53 0.05
657 4 0.00
658 3 0.00
663 1 0.00
664 3 0.00
667 49 0.04
668 4 0.00
669 33 0.03
670 1 0.00
671 61 0.05
672 46 0.04
673 85 0.07
674 241 0.21
675 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (643 bp):
TCGTTTTTCTATTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAAATGTTTGTAA
AAAAAATGGTTGAGATTTGGTTAGATGAATATGGATATTTCAAGGAGTCTTGGTGTCAAAAATCA
TTCAAAATTGAACCGGGCCCTCAAACATGTTTTTAGCCAAAAATCGTGATGATTATTACACAATT
TCGGCTAAAATTTTGCAAAATTGACCCGAAAGATATCTCCTCAATTTTTAGCCATAATACTCATA
AAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAT
ATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCT
TAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTCTCGGCACCAAA
AACCATGCAAAACTGAGCGGGGCCCGAAACGCGTTTTTAGACAAAAACAGTGATGGTTGTTAGTA
CACGATTTCGGCTAAAAATTTGCAAAAAATGACCGAAAAATTTTCTCCCAATTTTGGCTAAAATA
CCATAAAAATATATAATTCAATGCCAAAAAAATTGGAGGGCTTTTCACGCTTTTAATA
Found at i:2446 original size:15 final size:16
Alignment explanation
Indices: 2428--2457 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2418 ATAAATAATA
2428 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
2443 ATATTATAATCTAAA
1 ATATTATAATCTAAA
2458 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:2740 original size:42 final size:44
Alignment explanation
Indices: 2689--2782 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 44
2679 AGTGCATTAT
*
2689 CTAA-ATTCTA-C-TCCATCTCTAGGTAATTCATCAAAATAAAG
1 CTAATATTCTACCTTCCATCTCTAGATAATTCATCAAAATAAAG
2730 CTAATATTCTACTCTTCCATCTCTAGATAATTCATCAAAATAAAG
1 CTAATATTCTAC-CTTCCATCTCTAGATAATTCATCAAAATAAAG
2775 CTAATATT
1 CTAATATT
2783 AATTGTTGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
41 4 0.08
42 6 0.12
44 1 0.02
45 37 0.77
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.35
Consensus pattern (44 bp):
CTAATATTCTACCTTCCATCTCTAGATAATTCATCAAAATAAAG
Found at i:8155 original size:21 final size:20
Alignment explanation
Indices: 8085--8156 Score: 54
Period size: 22 Copynumber: 3.4 Consensus size: 20
8075 TATGGTTTTC
* *
8085 AAAACTTCATAGGGAGATTAA
1 AAAAATTCATAGGGAGA-TAT
* * *
8106 AAAAATTCCGTAAGGATGTTAT
1 AAAAATT-CATAGGGA-GATAT
8128 CAAAAATTCATAGGGAGGATAT
1 -AAAAATTCATAGGGA-GATAT
8150 AAAAATT
1 AAAAATT
8157 TCCCAGGGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
21 13 0.33
22 18 0.46
23 8 0.21
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.26
Consensus pattern (20 bp):
AAAAATTCATAGGGAGATAT
Found at i:8193 original size:22 final size:22
Alignment explanation
Indices: 8124--8225 Score: 77
Period size: 22 Copynumber: 4.6 Consensus size: 22
8114 CGTAAGGATG
* *
8124 TTATCAAAAATTCATAGGGAGGA
1 TTATCAAAATTTCAT-GGGAAGA
* *
8147 -TATAAAAATTTCCCA-GGGTA-A
1 TTATCAAAATTT--CATGGGAAGA
* *
8168 TTATCAAAATTTCATGAGG-TGG
1 TTATCAAAATTTCATG-GGAAGA
*
8190 TTATCGAAATTTCATGGGAAGA
1 TTATCAAAATTTCATGGGAAGA
8212 TTATCAAAATTTCA
1 TTATCAAAATTTCA
8226 AAAGAGGGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
20 2 0.03
21 4 0.07
22 53 0.87
24 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (22 bp):
TTATCAAAATTTCATGGGAAGA
Found at i:8237 original size:22 final size:22
Alignment explanation
Indices: 8168--8268 Score: 78
Period size: 22 Copynumber: 4.5 Consensus size: 22
8158 CCCAGGGTAA
*
8168 TTATCAAAATTTCATGAG-GTGG
1 TTATCAAAATTTCAAGAGAG-GG
* * * * *
8190 TTATCGAAATTTCATGGGAAGA
1 TTATCAAAATTTCAAGAGAGGG
*
8212 TTATCAAAATTTCAAAAGAGGG
1 TTATCAAAATTTCAAGAGAGGG
* * **
8234 TTATTAAAATTTTACAGAGAGCT
1 TTATCAAAATTTCA-AGAGAGGG
8257 TTATCAAAATTT
1 TTATCAAAATTT
8269 TATAATGAGG
Statistics
Matches: 61, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
22 45 0.74
23 16 0.26
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.36
Consensus pattern (22 bp):
TTATCAAAATTTCAAGAGAGGG
Found at i:8401 original size:21 final size:21
Alignment explanation
Indices: 8385--8447 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
8375 ACCATAGTGT
8385 GCTTATC-AAATTTCATAAGGA
1 GCTTATCAAAATTTCAT-AGGA
* *
8406 GGTTATCAAAATTTCATAAGCA
1 GCTTATCAAAATTTCAT-AGGA
* *
8428 GCTTATTAAATTTTTCATAG
1 GCTTATCAAA-ATTTCATAG
8448 TTTCGTTATC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 6 0.17
22 23 0.66
23 6 0.17
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (21 bp):
GCTTATCAAAATTTCATAGGA
Found at i:8433 original size:22 final size:21
Alignment explanation
Indices: 8385--8440 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
8375 ACCATAGTGT
*
8385 GCTTATCAAATTTCATAAGGA
1 GCTTATCAAATTTCATAAGCA
*
8406 GGTTATCAAAATTTCATAAGCA
1 GCTTATC-AAATTTCATAAGCA
*
8428 GCTTATTAAATTT
1 GCTTATCAAATTT
8441 TTCATAGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (21 bp):
GCTTATCAAATTTCATAAGCA
Found at i:8522 original size:22 final size:22
Alignment explanation
Indices: 8476--8523 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
8466 GTTTCATTGG
* *
8476 GAGGTTATCAAAATTTCATATT
1 GAGGTTATCAAAATTTCAGAGT
* *
8498 GAGGTTTTCAAAATTTTAGAGT
1 GAGGTTATCAAAATTTCAGAGT
8520 GAGG
1 GAGG
8524 CTAATTAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (22 bp):
GAGGTTATCAAAATTTCAGAGT
Found at i:8559 original size:21 final size:21
Alignment explanation
Indices: 8530--8576 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8520 GAGGCTAATT
*
8530 AATTCATAGGGAAGTTAACAA
1 AATTTATAGGGAAGTTAACAA
* **
8551 AATTTATAGGGAGGTTCTCAA
1 AATTTATAGGGAAGTTAACAA
8572 AATTT
1 AATTT
8577 TGATGTCGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (21 bp):
AATTTATAGGGAAGTTAACAA
Found at i:8617 original size:22 final size:22
Alignment explanation
Indices: 8592--8662 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
8582 TCGTTATTAG
8592 AATTTCATAGTGTGATTATCAA
1 AATTTCATAGTGTGATTATCAA
* *
8614 AATTTCATA-TG-GACGTCATTAA
1 AATTTCATAGTGTGA--TTATCAA
* *
8636 AATTTTATGGTGTGATTATCAA
1 AATTTCATAGTGTGATTATCAA
8658 AATTT
1 AATTT
8663 AATATAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 2 0.05
21 2 0.05
22 31 0.79
23 2 0.05
24 2 0.05
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.42
Consensus pattern (22 bp):
AATTTCATAGTGTGATTATCAA
Found at i:12119 original size:24 final size:24
Alignment explanation
Indices: 12084--12133 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
12074 CAGTTCAATT
*
12084 TTAGCTAGAGAATGTGCAAATACA
1 TTAGCTAAAGAATGTGCAAATACA
12108 TTAGCTAAAGAATGTGCAAATACA
1 TTAGCTAAAGAATGTGCAAATACA
12132 TT
1 TT
12134 GCTTCCCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (24 bp):
TTAGCTAAAGAATGTGCAAATACA
Found at i:12355 original size:74 final size:74
Alignment explanation
Indices: 12234--12381 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
12224 TATATAAACA
12234 AATAAATTACAAATAAACTCACATTCCGTGAGACTAGAACCTAGACCTACCAAACCCAAGACCTT
1 AATAAATTACAAATAAACTCACATTCCGTGAGACTAGAACCTAGACCTACCAAACCCAAGACCTT
12299 ATGGTCCAG
66 ATGGTCCAG
12308 AATAAATTACAAATAAACTCACATTCCGTGAGACTAGAACCTAGACCTACCAAACCCAAGACCTT
1 AATAAATTACAAATAAACTCACATTCCGTGAGACTAGAACCTAGACCTACCAAACCCAAGACCTT
12373 ATGGTCCAG
66 ATGGTCCAG
12382 GTAAACTGGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (74 bp):
AATAAATTACAAATAAACTCACATTCCGTGAGACTAGAACCTAGACCTACCAAACCCAAGACCTT
ATGGTCCAG
Found at i:23859 original size:31 final size:32
Alignment explanation
Indices: 23822--23904 Score: 114
Period size: 31 Copynumber: 2.5 Consensus size: 32
23812 ATGAAGAAGA
*
23822 AAATAAAAATGTTGATTTTTTGTTT-GCTACT
1 AAATAAAAATGTTGATTTTTTCTTTGGCTACT
23853 AAATAAAAATGTTGAGTTTTTTCTTTGGCTACT
1 AAATAAAAATGTTGA-TTTTTTCTTTGGCTACT
23886 AAATAGTAACAATGTTGAT
1 AAATA--AA-AATGTTGAT
23905 ATTAAGTACT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
31 15 0.33
32 9 0.20
33 11 0.24
35 3 0.07
36 8 0.17
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.43
Consensus pattern (32 bp):
AAATAAAAATGTTGATTTTTTCTTTGGCTACT
Found at i:24558 original size:53 final size:53
Alignment explanation
Indices: 24478--24587 Score: 211
Period size: 53 Copynumber: 2.1 Consensus size: 53
24468 TGTTTATTCA
*
24478 ATTGAACCTATTAAGTAAGCACACATACCAAATAATACAAAATGCAATGAACT
1 ATTGAACCTATTAAATAAGCACACATACCAAATAATACAAAATGCAATGAACT
24531 ATTGAACCTATTAAATAAGCACACATACCAAATAATACAAAATGCAATGAACT
1 ATTGAACCTATTAAATAAGCACACATACCAAATAATACAAAATGCAATGAACT
24584 ATTG
1 ATTG
24588 GATTTAAAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.24
Consensus pattern (53 bp):
ATTGAACCTATTAAATAAGCACACATACCAAATAATACAAAATGCAATGAACT
Done.