Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016511.1 Corchorus olitorius cultivar O-4 contig16544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55730

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--247
31
2.1
32
82
8
80
12
20
32
35
1.89
201--259
31
1.9
31
82
6
75
11
18
37
32
1.87
2979--3116
31
4.4
31
81
5
161
19
22
24
33
1.97
2987--3106
63
1.9
62
86
5
170
20
20
24
35
1.96
7568--7594
12
2.2
12
100
0
54
55
7
0
37
1.28
8647--8672
4
6.5
4
100
0
52
0
23
0
76
0.78
8766--8803
18
2.1
18
100
0
76
60
28
5
5
1.40
22039--22248
109
1.9
109
88
0
312
35
15
18
30
1.92
28073--28107
11
3.2
11
83
0
52
77
17
5
0
0.96
40627--40658
15
2.1
15
94
0
55
34
25
9
31
1.87
41649--41700
25
2.1
25
92
0
86
46
25
19
9
1.80
46656--46796
49
3.0
47
85
8
178
50
5
15
28
1.67
48644--48806
60
2.7
59
79
0
182
31
15
19
34
1.92
53837--53898
28
2.2
28
97
2
117
30
19
11
38
1.87

Tables:   1

The End!