Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016513.1 Corchorus olitorius cultivar O-4 contig16546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53839

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--282
69
2.1
69
98
0
275
29
17
19
33
1.95
282--334
25
2.1
25
92
0
88
35
18
20
24
1.95
24076--24110
14
2.4
14
90
4
52
77
0
8
14
0.99
25116--25192
40
1.9
40
97
0
145
36
14
16
32
1.89
37426--37475
16
3.1
16
100
0
100
42
18
26
14
1.87
37458--37609
71
2.1
73
91
3
245
31
22
19
26
1.97
41750--41892
12
11.8
12
88
4
207
26
16
39
17
1.90
41725--41892
61
2.8
61
93
2
277
26
15
39
18
1.91
48145--48207
11
5.9
11
75
7
67
41
3
0
55
1.16
48149--48215
22
3.1
22
78
8
93
44
4
0
50
1.22
48689--48725
11
3.4
11
92
0
65
0
24
56
18
1.41
49727--49764
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!