Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016516.1 Corchorus olitorius cultivar O-4 contig16549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7493
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Found at i:298 original size:11 final size:11
Alignment explanation
Indices: 274--308 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
264 TTGACAGCGC
274 AACAAAAACAA
1 AACAAAAACAA
* *
285 AACGAAAACGA
1 AACAAAAACAA
296 AACAAAAACAA
1 AACAAAAACAA
307 AA
1 AA
309 AACAGAAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:948 original size:323 final size:320
Alignment explanation
Indices: 334--3744 Score: 2989
Period size: 323 Copynumber: 10.6 Consensus size: 320
324 CAAACGACCC
* *
334 CTAATTAAATCGAAACAAAATTCAGA---TCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * ** * *
396 ATTTGGTTTGATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGCC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
** * *
461 GAGGCCCAAAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATATT
131 GAGGCCCTGAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATACT
* *
526 GACCCGAAAACTTTTGTCTCAA-TTTTTGCCACAATACTTTGAAAAAATATGA-AATTCAACGCC
195 GACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATAT-ATAATTCAACGCC
* * * * *
589 AAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTACCATTTTTTGTTTCCGAATTTATTT
259 AAAAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCA-TGTTT-TTT-CGAATTTATTT
654 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * *
719 ATTTGGTTCGATAAATATAGATATTTCAAGGACTTTTTGCGCCAAAAACCATGCAAATCTAAGTC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
* * ** * * *
784 GATGTCCTGAAACGCG-TTTAAAAAAAAATTGTGATGGTTTGTACACGATTTCGGCTAAATATTG
131 GAGGCCCTGAAACGCGTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATACTG
* ** * *
848 ACTCGAAAACTTTCATCTCAATTTTTTGCAACAATACTCTGAAAAAATATGTAATTCAACGCCTA
196 ACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAACGCC-A
* *
913 AAAGATTGACGTGATTTTCACGCTTCTAATATCGTTCTTT-CATTTTTTTTGTTTCCGAATTTAT
260 AAAAATTGACGTGATTTTCACGCTTCTAATATCGTT-TTTCCA---TGTTT-TTT-CGAATTTAT
977 TT
319 TT
* * * *
979 CTAAATAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGTTGAA
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * * *
1044 ATTTGGTTCGATAAATATAGATATTTCAAGGAATTTTTGCGCCAAAAACTATGTAAATCTGAGTC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
* *
1109 GAGGCCCTGAAAACGCGTTTTTAGAAAAAAAAACTGTGATCGTTAGTACACGATTTCGGCTAAAA
131 GAGGCCCTG-AAACGCG-TTTTAG--CAAAAAACTGTGATGGTTAGTACACGATTTCGGCT-AAA
* ** * **
1174 AACT-AGCCCGCAAATTTTTTTTTCTCAATTTTTTGCCACAATACTCAG-AAAAATATATCGTT-
191 TACTGA-CCCG-AAA-ACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTC
** * * *
1236 --TTCC--------GA--TG-TTTTTACGCTTCTAATATCGTTTTCCCATGATTTTTCGAATTTA
253 AACGCCAAAAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTTCGAATTTA
1288 TTT
318 TTT
* * ** *
1291 CTAATTAAATCGAAACAATG-TTTAAATAATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
1 CTAATTAAATCGAAACAA-GATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* * ** * * * * **
1355 TATTTGATTAAATGATTTTATATATTTTCATGGAGTCTTTATGCCAAAAACCATGCATAA-CTGA
65 GATTTGGTTCGATGAATATAGATA-TTTCAAGGAGTCTTTGCGCCAAAAACCATGCA-AATCTGA
* * * *
1419 GTCGAGGGCCC-GAAACGCGTTTTTAGCAAAAACCCGTGGTGGTTAGTACACTATTTCGGCTAAA
128 GTCGA-GGCCCTGAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAA
* * *
1483 -ACTGACCCGAATA-TTTTTTCCCTCAATTCTTTGCCACAATACTCAGAAAAAATATATAATTCA
191 TACTGACCCGAAAACTTTTTT--CTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCA
* ** ** * **
1546 ACACCAAAGAAATTGACGACATTTTCTTGCTTCTAATATCGTTTTTCCAT-TTTTTCCGAATCAA
254 ACGCCAAA-AAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTTCGAATTTA
*
1610 TTG
318 TTT
*
1613 CTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * **
1678 ATATGGTTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAAT-TGAG-
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCA-AATCTGAGT
* * ** * * * ** * **
1741 C-AGGGACTTCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATGAGGCTTAAA
130 CGA-GGCCCT-GAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGC-TAAA
* * * * * * *
1805 TTTTGCAAAATCTGACCCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAGTATA
191 ---T-----A-CTGACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATA
* * * * * * *
1870 TAATTCAACGACAATAAAATTGAAGGGTTTTTTACGATGCTAATATCG-TTTTCCATGTTTTTT-
247 TAATTCAACGCCAA-AAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTTC
*
1933 GAATTCATTT
311 GAATTTATTT
* * * * *
1943 CCAATTAAATCGAAACAAAATTCAAATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * ** * * *
2008 ATTTGGTTTGATGATTATAGATATTTCAAGGAATCTTTAAGACAAAAACCATGCAAAACTGAGCC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
* ** * * *
2073 GAGTCCCCAAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTTGGCTAAATATT
131 GAGGCCCTGAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATACT
* * *
2138 GACCCGAAAACTTTTATCTCAATATTTTGCCACAATACTCTGAAAAAATATGTAATTCAACGCCA
195 GACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAACGCCA
* * * *
2203 AAAAGATTGACCTGATTTTCACGCTTCTAATATCGTTCTTCAATTTTTTTTCCGAATTTATTT
260 AAAA-ATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTT-CGAATTTATTT
2266 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * ** * *
2331 ATTTAGTTCGATAAATATAGATATTTCAAGGAATCTAAGCGCCAAAAACGATGCAAATCTAAGTC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
* * *
2396 GAGGCCCTGAAACGCGTTTTTAGAAATAAAAACTGTGATGGTAAGTACACGATTTCGGCTAAAAA
131 GAGGCCCTGAAACGCG-TTTTAG-CA-AAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATA
* * * ** **
2461 CTGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTT--TT
193 CTGACCCG-AAAA-CTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAAC
* * * * *
2524 TCC-----A-T-A--T--TTTTTACGTTTCTAATATCGTTTTCCCATGATTTTTCGAATTTATTT
256 GCCAAAAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTTCGAATTTATTT
* ** * * *
2578 CTATTTAAA---AAAGCTTGTTTC-GATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
1 CTAATTAAATCGAAA-CAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* ** * * * **
2639 GATTTGATTAAATGATTATAGATTTTTAAAGGAGTCTTTATGCCAAAAACCATGCATAA-CTGAG
65 GATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCA-AATCTGAG
* * * * * *
2703 TTGAGGGCCTGAAACGCATTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAAA-A
129 TCGAGGCCCTGAAACGC-GTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATA
* * * * *
2767 CCTGACACGAAAAAGTTATTTCTCAA-TTTTTGCCACAATACTCGGAGAAAATATATAATTCAAC
193 -CTGACCCG-AAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAAC
* ** ** * **
2831 ACCAAAGAAATTGACGACATTTTCTTGCTTCTAATATCGTTTTTTCCATTTTCTTTTACGAATCA
256 GCCAAA-AAATTGACGTGATTTTCACGCTTCTAATATCG-TTTTTCCATGTT-TTTT-CGAATTT
*
2896 ATTG
317 ATTT
* * * *
2900 CTAATTAAATCGAAAGAAGATTCAGATGCACGTAAAAATAAATCCATATATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * * * * ** *
2965 ATATGATTCGATGAATGTAGTTATTTCAAGGAGTCTATGCGCCTAAATTCATGCATGAT-TGAG-
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCA-AATCTGAGT
** * * * * ** ** * **
3028 C-AGGGACTCC-GAGGCACGTTTTTAGCCAAAAACCGTGATGCTTAAAATGCGAATGAGGCTTAA
130 CGA-GG-C-CCTGAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGC-TAA
* * * * * * * * *
3091 ATTTTGCAAAATCTGACCAGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGGAAAAATAA
190 A---T-----A-CTGACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATAT
* * * * * *
3156 ATAATTCAACGACAATAAAATTGAAGGGTTTTTAACGATTCTAATATCGTTTTTCCATGTTTTTT
246 ATAATTCAACGCCAA-AAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTT
*
3221 -GAATTCATTT
310 CGAATTTATTT
* * * **
3231 CTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTTTATCCAATATGGCT-TT
1 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * *
3295 ATTTGGTTCGATAAATATAGATATTTCAAGGAATCTATGCGCCAAAAACCATGCAAATCTAAGTC
66 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
* *
3360 GAGGCCCTGAAACGCGGTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAAC
131 GAGGCCCTGAAACGC-GTTTTAGCAA-AAAACTGTGATGGTTAGTACACGATTTCGGCTAAATAC
* * * ** ***
3425 TGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTT--TTT
194 TGACCCG-AAAA-CTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAACG
*
3488 CC-----A-T---GT--TTTT-ACGTTTCTAATATCGTTTTTCCATGATTTTTT-GAATTTATTT
257 CCAAAAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATG-TTTTTTCGAATTTATTT
* *
3540 CTAATTAAATCGAAACAAGATTTC-GATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
1 CTAATTAAATCGAAACAAGA-TTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* ** * * **
3604 GATTTGATTAAATGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAA-CTGAG
65 GATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCA-AATCTGAG
* * ** * * *
3668 TTGAGGGCCTGAAACGCGTTTTTAGCAAAAAACCATGGTGGTTAGTACACAATTTCGGCTAAAAA
129 TCGAGGCCCTGAAACGCG-TTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATA
3733 CTGACCCGAAAA
193 CTGACCCGAAAA
3745 AATAAATAAT
Statistics
Matches: 2501, Mismatches: 464, Indels: 264
0.77 0.14 0.08
Matches are distributed among these distances:
305 33 0.01
306 11 0.00
307 72 0.03
308 48 0.02
309 226 0.09
310 111 0.04
311 5 0.00
312 114 0.05
313 69 0.03
314 12 0.00
315 3 0.00
316 2 0.00
317 24 0.01
318 3 0.00
319 25 0.01
320 118 0.05
321 158 0.06
322 144 0.06
323 343 0.14
324 7 0.00
325 314 0.13
326 18 0.01
327 39 0.02
328 4 0.00
329 12 0.00
330 260 0.10
331 172 0.07
332 27 0.01
333 36 0.01
334 24 0.01
335 66 0.03
336 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (320 bp):
CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAACCATGCAAATCTGAGTC
GAGGCCCTGAAACGCGTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATACTG
ACCCGAAAACTTTTTTCTCAATTTTTTGCCACAATACTCTGAAAAAATATATAATTCAACGCCAA
AAAATTGACGTGATTTTCACGCTTCTAATATCGTTTTTCCATGTTTTTTCGAATTTATTT
Found at i:3605 original size:965 final size:963
Alignment explanation
Indices: 334--7239 Score: 6067
Period size: 965 Copynumber: 7.2 Consensus size: 963
324 CAAACGACCC
334 CTAATTAAATCGAAACAAAATTC--A-GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * *
396 ATTTGGTTTGATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGCC
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGTC
* ** * *
461 GAGGCCCAAAAACGCGTTTTTAGCCA-AAAACTGTGATGGTTAGTACACGATTTCGGCTAAATAT
131 GAGGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAAC
* * *
525 TGACCCG-AAAA-CTTTTGTCTCAATT-TTTGCCACAATACTTTGAAAAAATATGAAATTCAACG
196 TGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATAT---A-T---CG
*** * * * * **
587 CCAAAAGATT-GACGTAATTTTCACGCTTCTAATATCGTTCTACCATTTTTTGTTTCCGAATTTA
254 -----TTTTTCCATGT--TTTT-ACGCTTCTAATATCGTTTTTCCATGATTT-TTT--GAATTTA
* *
651 TTTCTAATTAAATCGAAACAAGA-TTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGC
308 TTTCTAATTAAATCGAAACAAGATTTC-GATGATCGTAAAAACAAATCCTTAAATCCAATGTGGC
* ** * * * * * **
715 TGAGATTTGGTTCGATAAATATAGATATTTCAAGGACTTTTTGCGCCAAAAACCATGCA-AATCT
372 TGAGATTTGATTAAATGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAA-CT
* * * ** ** * * *
779 AAGTCGATGTCCTGAAACGCG--TTTAAAAAAAAATTGTGATGGTTTGTACACGATTTCGGCTAA
436 GAGTCGAGGGCCTGAAACGCGTTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAA
* * * * ** * * *
842 ATATTGACTCG-AAAACTTTCATCTCAATTTTTTGCAACAATACTCTGAAAAAATATGTAATTCA
501 AAACTGACCCGAAAAAGTTTTTTCTCAA-TTTTTGCCACAATACTCGGAAAAAATATATAATTCA
* ** **
906 ACGCCTAAAAGATTGACGTGATTTTCACGCTTCTAATATCGTTCTTT-CATTTTTTTTGTTTCCG
565 ACGCCAAAAAGATTGACGACATTTTCTTGCTTCTAATATCGTT-TTTCCA---TTTTT-TTT-CG
** * * * *
970 AATTTATTTCTAAATAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAAT
624 AATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAAT
* * * * * * * * * *
1035 GTGGTTGAAATTTGGTTCGATAAATATAGATATTTCAAGGAATTTTTGCGCCAAAA-ACTATGTA
689 GTGGCTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTC-ATGCA
** * ** * * **
1099 -AATCTGAGTC-GAGG-C-CCTGAAAACGCGTTTTTAGAAAAAAAAACTGTGATCGTTAGTACAC
753 TAAT-TGAG-CAG-GGACTCC-G-GGACACGTTTTTAG--CCAAAAACCGTGATGGTTAGTATGC
* * * * * * *
1160 GATTTCGGC-T--A------AAAAACT-AGCCCG-CAAATTTTTTTTTCTCAATTTTTTGCCACA
811 GAATTAGGCTTAAATTTTGCAAAAACTGA-CCAGAC-AA--GTTTTTCCTCAATTATTTGTCACA
** ** *
1214 ATACTCAG-AAAAATATATCGTT-TTC--C-----GA-T-----GTTTTT-ACGCTTCTAATATC
872 ATACTCAGAAAAAATATATAATTCAACGACAAAAAGATTGAAGGGTTTTTCACGATTCTAATATC
* * *
1263 GTTTTCCCATGATTTTTCGAATTTATTT
937 GTTTTTCCATG-TTTTTTGAATTCATTT
** * * * *
1291 CTAATTAAATCGAAACAATGTTTAAATAATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAT
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* ** * * * * * * *
1356 ATTTGATTAAATGATTTTATATATTTTCATGGAGTCTTTATGCCAAAAACCATGCATAACTGAGT
66 ATTTGGTTCGATAAATATAGATA-TTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGT
* * * * * *
1421 CGAGGGCCC-GAAACGCGTTTTTAGCAA-AAACCCGTGGTGGTTAGTACACTATTTCGGCT-AAA
130 CGA-GGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA
* * ** **
1483 ACTGACCCG-AATA--TTTTTTCCCTCAATTCTTTGCCACAATACTCAGAAAAAATATATAATTC
194 ACTGACCCGAAAAAGCTTTTTT--CTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTT-
*** * * * *
1545 AACACCAAAGAAATTGACGACATTTTCTTGCTTCTAATATCGTTTTTCCAT--TTTTTCCGAATC
256 -TTTCC-ATG---TT-------TTTAC--GCTTCTAATATCGTTTTTCCATGATTTTT-TGAATT
* * *
1608 AATTGCTAATTAAATCGAAACAAGA-TTCAGATGCA-CGTAAAAACAAATCCTTATATCCAATGT
306 TATTTCTAATTAAATCGAAACAAGATTTC-GATG-ATCGTAAAAACAAATCCTTAAATCCAATGT
* * ** * ** **
1671 GGCTGAGATATGGTTCGATGAATATAG-TTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATA
369 GGCTGAGATTTGATTAAATGATTATAGATT-TTTCAAGGAGTCTTTATGCCAAAAACCATGCATA
* * ** * * *
1735 ATTGAG-C-AGGGACTTCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATGAG
433 ACTGAGTCGAGGG-CCT-GAAACGCGTTTTTAGCAAAAAACCGTGGTGGTTAGTA--C-----A-
* * * * * *
1798 GCTTAAATTT-TGC-AAAATCTGACCCG-ACAAGTTTTTCCTCAATTATTTGTCACAATACTCAG
488 -C---AATTTCGGCTAAAAACTGACCCGAAAAAGTTTTTTCTCAATT-TTTGCCACAATACTCGG
* * * ** * *
1860 AAAAAGTATATAATTCAACGACAATAAA-ATTGAAG-GGTTTT-TTACGATGCTAATATCG-TTT
548 AAAAAATATATAATTCAACGCCAA-AAAGATTGACGACATTTTCTT--GCTTCTAATATCGTTTT
* * * * *
1921 TCCATGTTTTTT-GAATTC-ATTTCCAATTAAATCGAAACAAAATTCAAATG-ATCGTAAAAACA
610 TCCATTTTTTTTCGAA-TCAATTGCTAATTAAATCGAAACAAGATTCAGATGCA-CGTAAAAACA
* * * * * * * **
1983 AATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATGATTATAGATATTTCAAGGAATCTTTAA
673 AATCCTTATATCCAATGTGGCTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGC
* ** * * * * * * *** * *
2048 GACAAAAACCATGCAAAACTGAGCCGAGTCCCCAAAACGCGTTTTTAGCCAAAAACTGTGATGGT
738 GCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGACACGTTTTTAGCCAAAAACCGTGATGGT
** * * * * *
2113 TAGTACACGATTTTGGC-TAAATATTG-----AC---CC-GAAAACTTTTAT-CTCAA-TATTTT
803 TAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGACCAGACAAGTTTT-TCCTCAATTA-TTT
* * * * *** * *
2166 GCCACAATACTCTGAAAAAATATGTAATTCAACGCCAAAAAGATTGACCTGATTTTCACGCTTCT
866 GTCACAATACTCAGAAAAAATATATAATTCAACGACAAAAAGATTGAAGGGTTTTTCACGATTCT
* * * *
2231 AATATCGTTCTTCAATTTTTTTTCCGAATTTATTT
931 AATATCGTTTTTCCATGTTTTTT--GAATTCATTT
* * *
2266 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * * *
2331 ATTTAGTTCGATAAATATAGATATTTCAAGGAATC-TAAGCGCCAAAAACGATGCAAATCTAAGT
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTA-CGCCAAAAACCATGCAAAACTGAGT
* *
2395 CGAGGCCCTGAAACGCGTTTTTAGAAATAAAAACTGTGATGGTAAGTACACGATTTCGGCTAAAA
130 CGAGGCCCTAAAACGCGTTTTTAGAAAT-AAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA
2460 ACTGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTTTTT
194 ACTGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTTTTT
* * * * *
2525 CCATATTTTTTACGTTTCTAATATCGTTTTCCCATGATTTTTCGAATTTATTTCTATTTAAA---
259 CCAT-GTTTTTACGCTTCTAATATCGTTTTTCCATGATTTTTTGAATTTATTTCTAATTAAATCG
**
2587 AAAGCTTG-TTTCGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAA
323 AAA-CAAGATTTCGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAA
* *
2651 TGATTATAGATTTTTAAAGGAGTCTTTATGCCAAAAACCATGCATAACTGAGTTGAGGGCCTGAA
387 TGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAACTGAGTCGAGGGCCTGAA
* * *
2716 ACGCATTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAAAACCTGACACGAAAAA
452 ACGCGTTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAA
* * *
2781 GTTATTTCTCAATTTTTGCCACAATACTCGGAGAAAATATATAATTCAACACCAAAGAA-ATTGA
517 GTTTTTTCTCAATTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCCAAA-AAGATTGA
2845 CGACATTTTCTTGCTTCTAATATCGTTTTTTCCATTTTCTTTTACGAATCAATTGCTAATTAAAT
581 CGACATTTTCTTGCTTCTAATATCG-TTTTTCCATTTT-TTTT-CGAATCAATTGCTAATTAAAT
* * *
2910 CGAAAGAAGATTCAGATGCACGTAAAAATAAATCCATATATCCAATGTGGCTGAGATATGATTCG
643 CGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATATGATTCG
* * * *
2975 ATGAATGTAGTTATTTCAAGGAGTCTATGCGCCTAAATTCATGCATGATTGAGCAGGGACTCCGA
708 ATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCG-
* ** * *
3040 GG-CACGTTTTTAGCCAAAAACCGTGATGCTTAAAATGCGAATGAGGCTTAAATTTTGCAAAATC
772 GGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAAC
* *
3104 TGACCAGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGGAAAAATAAATAATTCAACGAC
837 TGACCAGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGAC
*
3169 AATAAA-ATTGAAGGGTTTTTAACGATTCTAATATCGTTTTTCCATGTTTTTTGAATTCATTT
902 AA-AAAGATTGAAGGGTTTTTCACGATTCTAATATCGTTTTTCCATGTTTTTTGAATTCATTT
* ** * **
3231 CTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTTTATCCAATATGGCT-TT
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * *
3295 ATTTGGTTCGATAAATATAGATATTTCAAGGAATCTATGCGCCAAAAACCATGCAAATCTAAGTC
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGTC
* *
3360 GAGGCCCTGAAACGCGGTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAAC
131 GAGGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAAC
3425 TGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTTTTTCC
196 TGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTTTTTCC
*
3490 ATGTTTTTACGTTTCTAATATCGTTTTTCCATGATTTTTTGAATTTATTTCTAATTAAATCGAAA
261 ATGTTTTTACGCTTCTAATATCGTTTTTCCATGATTTTTTGAATTTATTTCTAATTAAATCGAAA
3555 CAAGATTTCGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAATGAT
326 CAAGATTTCGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAATGAT
*
3620 TATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAACTGAGTTGAGGGCCTGAAACGC
391 TATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAACTGAGTCGAGGGCCTGAAACGC
*
3685 GTTTTTAGCAAAAAACCATGGTGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAA----
456 GTTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAAGTTT
* * ** *
3746 ---ATAAATAATT----C-A-A--C-G--ACAATA-A-AATT----G-----AAG---G--G---
521 TTTCTCAATTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCCAAAAAGATTGACGACA
* * *
3778 TTTT-TTACGATTCTAATATCG-TTTTCCATATTTTTT-GAATTC-ATTTCTAATTAAATCGAAA
586 TTTTCTT--GCTTCTAATATCGTTTTTCCATTTTTTTTCGAA-TCAATTGCTAATTAAATCGAAA
* * * * * * *
3839 TGAA-ATTCCGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATG-
648 -CAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATATGATTCGATGA
* * ** ** * * * * ***
3902 ATGATAGATATTTCAAGGAGGCTTTAAGCCAAAAACCATGCAAAACTGAGCCGAGG-CCCCAAAA
712 AT-ATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAG-GGACTCCGGGA
* * ** * * * *
3966 CGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCGGC-AAAATATTG-----A--G-
775 CACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGA
* * * * * *
4022 CC-GAAAACTTTCAT-CTCAATT-TTT-TACACAATACT-ATGAAAAAATATGTAATTCAATGCC
840 CCAGACAAGTTT-TTCCTCAATTATTTGT-CACAATACTCA-GAAAAAATATATAATTCAACGAC
* * * * * * *
4082 AAAAAGATTGACGTGATTTTCACGCTTCTAATATCGTTCTTCCATTTTTTTGTTTCCGAATTTAT
902 AAAAAGATTGAAGGGTTTTTCACGATTCTAATATCGTTTTTCCA--TGTTT-TTT--GAATTCAT
4147 TT
962 TT
* * * * *
4149 CTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATGAG
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * *
4214 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTTTTTGCGCCAAAAACCATGCAAATCTGAGTC
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGTC
* * * * *
4279 GAGGCTCTGAAACGCGTTTTTAGAAAAAAAAAAAACTGTGATGATTAGTACACGATTTCGGTTAA
131 GAGGCCCTAAAACGCGTTTTTAG----AAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAA
* *
4344 AAACTGACCCGAAAAAG-TATTTTTCTCAATTTTTTGCCACGATACTCG-GAAAAAATTTATCGT
192 AAACTGACCCGAAAAAGCT-TTTTTCTCAATTCTTTGCCACGATACT-GTGAAAAAATATATCGT
*
4407 TTTTCTATGTTTTTTACGCTTCTAATATCGTTTTTCCAAAAAGATTGACGGGATTTTCTTGCTTC
255 TTTTCCATG-TTTTTACGCTTCTAATATCGTTTTTCC------A-T-----GATTTT-TTG----
* * *
4472 TTATATCCGAATTAATTTCTAATTAAATCGAAACAACATTTAGATGATCGTAAAAGCAAATCCTT
302 --A-AT-----TT-ATTTCTAATTAAATCGAAACAAGATTTCGATGATCGTAAAAACAAATCCTT
*
4537 AAATCCAATGTGGCTGAGATTTGATTAAATGATTATAGATTTTTCAAGGAGTTTTTATGCCAAAA
358 AAATCCAATGTGGCTGAGATTTGATTAAATGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAA
* * *
4602 ACCATGCATAACTGAGTCGAAGGCCGGAAACGCGTTTTTAGCAAAAAAACTGTGGTGGTTAGTAC
423 ACCATGCATAACTGAGTCGAGGGCCTGAAACGCGTTTTTAGC-AAAAAACCGTGGTGGTTAGTAC
* *
4667 ACGATTTTGGCTAAAAACTGACCCGAAAAAGTTTTTTCCTCAATTCTTTGCCACAATACTCGGAA
487 ACAATTTCGGCTAAAAACTGACCCGAAAAAGTTTTTT-CTCAATT-TTTGCCACAATACTCGGAA
* * *
4732 AAAATATATAATTGAACGCCAAAAATATTGACGACATTTTCTTGCTTCTAATATTGTTTTTCCAT
550 AAAATATATAATTCAACGCCAAAAAGATTGACGACATTTTCTTGCTTCTAATATCGTTTTTCCAT
* *
4797 TTTTTTTCCGAATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAGCAAATCCT
615 TTTTTTT-CGAATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCT
*
4862 TATAT-C-------C----A-AT-A-T--A-G--T-TA--T-TTT-AAGGAGTCTTTGCTCCAAA
679 TATATCCAATGTGGCTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAA
4902 ATTCATGCATAATTGAGCAGGGACTCCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTAT
744 ATTCATGCATAATTGAGCAGGGACTCCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTAT
* *
4967 GCGAATTAGGCTTAAATTTTGCAAAAACTGACCCGACAAGTTTTTCCCCAATTATTTGTCACAAT
809 GCGAATTAGGCTTAAATTTTGCAAAAACTGACCAGACAAGTTTTTCCTCAATTATTTGTCACAAT
* * * * * *
5032 ACTCAGGAAAAACATATAATTCAACAACAAAAAAAATGAAGGGTTTTTTACGATTCTAATATCGT
874 ACTCAGAAAAAATATATAATTCAACGACAAAAAGATTGAAGGGTTTTTCACGATTCTAATATCGT
*
5097 TTTCCCATGTTTTTTGAATTCATTT
939 TTTTCCATGTTTTTTGAATTCATTT
* * * *
5122 CTAATTAAATCGAAACAAAATTCTGATGATCGTAAAAACAAAACCTTAAATCCAACGTGGATGAG
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
** * * *
5187 ATTTGGTTTAATGATTATAGATATTTCAAGGAGTCTTTTTATGCCAAAAACCATGCAAAACTGAG
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTC--TTTACGCCAAAAACCATGCAAAACTGAG
* ** * *
5252 TCGAGGCCCCAAAACGCGTTTTTAGCCA-AAAACTATGATGGTTAGTACACGATTTCGGCTAAAT
129 TCGAGGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA
** ** * *
5316 GTTGACCCG-AAAA-CTTTCATCTCAATT-TTTGCCAACAATACTCTGAAAAAATATGAAATTCA
194 ACTGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCC-ACGATACTGTGAAAAAATAT---A-T--
*** * * * * **
5378 ACGCCAAAAAGATT-GACGTAATTTTCACGCTTCTAATATCGTTCTACCATTTTTTTTGTTTCCG
252 -CG------TTTTTCCATGT--TTTT-ACGCTTCTAATATCGTTTTTCCA--TGATTT-TTT--G
* *
5442 AATTTATTTCTAATTAAATCGAAACAAGA-TTCAGATGCTCGTAAAAACAAATCCTTATATCCAA
302 AATTTATTTCTAATTAAATCGAAACAAGATTTC-GATGATCGTAAAAACAAATCCTTAAATCCAA
* ** * * * * **
5506 TGTGGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGACTCTTTGCGCCAAAAACCATGCA
366 TGTGGCTGAGATTTGATTAAATGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCA
* * * * * *
5571 AAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGAAATAAAAAAAACTGTGATAGTTAGTACACAA
431 TAACTGAGTCGAGGGCCTGAAACGCGTTTTTAG-----CAAAAAACCGTGGTGGTTAGTACACAA
* *
5636 TTTCGGCTAAAAACTGACACGAAAAAGTTTTTTTCTCAATTTTTTGCCCCAATACTCGGAAAAAA
491 TTTCGGCTAAAAACTGACCCGAAAAAG-TTTTTTCTCAA-TTTTTGCCACAATACTCGGAAAAAA
* * * *
5701 TATATAATTCAACGTCAAAAAGATTGACGACATTTTCTTGCTTCCAATATCATTTTCCCA-TTTT
554 TATATAATTCAACGCCAAAAAGATTGACGACATTTTCTTGCTTCTAATATCGTTTTTCCATTTTT
* *
5765 TTTCTGAATAAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAATAACAAATCCTTATA
619 TTTC-GAATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATA
*
5830 TCCAATGTGG-TAGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCTAAA-T
683 TCCAATGTGGCT-GAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATT
* * * *
5893 CAAGCATGATTGAGCAGGGACTCTGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGTG
747 CATGCATAATTGAGCAGGGACTCCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCG
5958 AATTAGGCTTAAATTTTGCAAAAACTGACCCA-ACAAGTTTTTCCTCAATTATTTGTCACAATAC
812 AATTAGGCTTAAATTTTGCAAAAACTGA-CCAGACAAGTTTTTCCTCAATTATTTGTCACAATAC
** * *
6022 TCAGAAAAAATATATAATTCAACGACAAAATATTTTGAA-GGTTTTTTACGATTCAAATATCG-T
876 TCAGAAAAAATATATAATTCAACGACAAAA-AGATTGAAGGGTTTTTCACGATTCTAATATCGTT
*
6085 TTTCCATGTTTTCTGAATTCATTT
940 TTTCCATGTTTTTTGAATTCATTT
* *
6109 CTAAATAAATCGAAACAAAAGTT-AGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGA
1 CTAATTAAATCGAAACAAAA-TTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA
* * * *
6173 GATTTGGTTTC-ATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTTAG
65 GATTTGG-TTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAG
**** * *
6237 TCGAGGCCC-AAAACGCGTTTTTA-CCCCAAAACTGTGATGGTTAGTACACGATTTCGGCTTAAT
129 TCGAGGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAA
* ** * * ** * * ** *
6300 ATTGACCCG-AAAA-CTTTCATCTCAATTTTTTGCCACAATACCCTGAAAAAATTTGTAATTCAA
194 ACTGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTT--T
* * * * *
6363 TGCCAAAAAGATTGACGTGATTTTCACGCTTCTAACATTGTTCTTCCAT-TTTTTTTCCGAATTT
257 TTCC------A-T---GT--TTTT-ACGCTTCTAATATCGTTTTTCCATGATTTTTT--GAATTT
* * * *
6427 ATTTTTAATTAAATCGAAACCAGA-TTCAGATGCTCGTAAAAAACAAATCCTTATATCCAATGTG
307 ATTTCTAATTAAATCGAAACAAGATTTC-GATGATCGT-AAAAACAAATCCTTAAATCCAATGTG
* ** * * * * * ** * **
6491 GCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAATCGTTGCGCTAAAAACGTTGCA-AAT
370 GCTGAGATTTGATTAAATGATTATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAA-
* * * * * *
6555 CTGAGTCGAGGCCCTGAAATGCGTTTTTAGAAGAAAAAAAACGTGATGGTTAGTACACGATTTCG
434 CTGAGTCGAGGGCCTGAAACGCGTTTTT---AGCAAAAAACCGTGGTGGTTAGTACACAATTTCG
6620 GCTAAAAACTGACCCGAAAAAGTTGTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATAT
496 GCTAAAAACTGACCCGAAAAAGTT-TTTTCTCAA-TTTTTGCCACAATACTCGGAAAAAATATAT
* * *
6685 AATTCAACGCCAAAAAGATTGACGATATTTTCCTGCTTCTAATATCGTTTTTCCATTTTTTTCCG
559 AATTCAACGCCAAAAAGATTGACGACATTTTCTTGCTTCTAATATCGTTTTTCCATTTTTTTTCG
6750 AATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAAT
624 AATCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAAT
* *
6815 GTGGTTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTATGCGCCAAAATTCATGCAT
689 GTGGCTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCAT
* *
6880 AATTGAGCAGGGACTCCGGGACTCGTTTTTAG-C--AAACTGTGATGGTTAGTATGCGAATTAGG
754 AATTGAGCAGGGACTCCGGGACACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGG
* *
6942 CTTAAATTTTGCAAAAACTGACCCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCTGAAAA
819 CTTAAATTTTGCAAAAACTGACCAGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAA
*
7007 AATATATAATTCAACGACAAAAAAATTGAAGGGCTTTTT-ACGATTCTAATATCGTTTTTCCATG
884 AATATATAATTCAACGACAAAAAGATTGAAGGG-TTTTTCACGATTCTAATATCGTTTTTCCATG
7071 TTTTTTGAATTCATTT
948 TTTTTTGAATTCATTT
* * * *
7087 CTAATTAAATTGAAACAAAATTCAGATGATCGTAAAAACAAATCTTTAAATCAAATGTGGTTGAG
1 CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * *
7152 ATTTGGTTTGATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGTC
66 ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGTC
7217 GAGGCCCTAAAACGCGTTTTTAG
131 GAGGCCCTAAAACGCGTTTTTAG
7240 CCAAAAATTG
Statistics
Matches: 4988, Mismatches: 620, Indels: 659
0.80 0.10 0.11
Matches are distributed among these distances:
912 5 0.00
913 64 0.01
914 14 0.00
915 7 0.00
916 4 0.00
918 66 0.01
919 82 0.02
922 1 0.00
923 109 0.02
924 174 0.03
925 7 0.00
926 4 0.00
927 12 0.00
928 4 0.00
929 12 0.00
930 1 0.00
931 2 0.00
933 1 0.00
935 2 0.00
936 6 0.00
937 3 0.00
943 1 0.00
944 2 0.00
945 4 0.00
946 1 0.00
947 5 0.00
949 3 0.00
950 157 0.03
951 51 0.01
952 67 0.01
953 21 0.00
954 15 0.00
955 6 0.00
956 2 0.00
957 173 0.03
958 45 0.01
959 147 0.03
960 80 0.02
961 286 0.06
962 209 0.04
963 153 0.03
964 290 0.06
965 404 0.08
966 26 0.01
967 172 0.03
968 45 0.01
969 10 0.00
970 50 0.01
971 80 0.02
972 12 0.00
973 129 0.03
974 73 0.01
975 137 0.03
976 46 0.01
977 160 0.03
978 257 0.05
979 273 0.05
980 103 0.02
981 120 0.02
982 24 0.00
983 2 0.00
984 124 0.02
985 45 0.01
987 112 0.02
988 177 0.04
989 36 0.01
990 18 0.00
991 7 0.00
992 48 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (963 bp):
CTAATTAAATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
ATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGTC
GAGGCCCTAAAACGCGTTTTTAGAAATAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAAC
TGACCCGAAAAAGCTTTTTTCTCAATTCTTTGCCACGATACTGTGAAAAAATATATCGTTTTTCC
ATGTTTTTACGCTTCTAATATCGTTTTTCCATGATTTTTTGAATTTATTTCTAATTAAATCGAAA
CAAGATTTCGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAATGAT
TATAGATTTTTCAAGGAGTCTTTATGCCAAAAACCATGCATAACTGAGTCGAGGGCCTGAAACGC
GTTTTTAGCAAAAAACCGTGGTGGTTAGTACACAATTTCGGCTAAAAACTGACCCGAAAAAGTTT
TTTCTCAATTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCCAAAAAGATTGACGACA
TTTTCTTGCTTCTAATATCGTTTTTCCATTTTTTTTCGAATCAATTGCTAATTAAATCGAAACAA
GATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATATGATTCGATGAATAT
AGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGACACGTT
TTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGACCAGAC
AAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAAAGATT
GAAGGGTTTTTCACGATTCTAATATCGTTTTTCCATGTTTTTTGAATTCATTT
Found at i:5537 original size:329 final size:322
Alignment explanation
Indices: 3740--7493 Score: 3012
Period size: 329 Copynumber: 11.6 Consensus size: 322
3730 AAACTGACCC
* * * *** * *
3740 GAAAAAATAAATAATTCAACGACAATAAA-ATTGAAGGGTTTTTTACGATTCTAATATCGTT-TT
1 GAAAAAATATATAATTCAACGCCAA-AAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTT
* * *
3803 CCATATTTTTT--GAATTCATTTCTAATTAAATCGAAATGAA-ATTCCGATGCTCGTAAAAACAA
65 CCATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAA-CAAGATTCAGATGCTCGTAAAAACAA
* * * **
3865 ATCCTTAAATCCAATGTGGCTGAGATTTGGTTTGATG-ATGATAGATATTTCAAGGAGGCTTTAA
129 ATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAAT-ATAGATATTTCAAGGAGTCTTTGC
* **
3929 GCCAAAAACCATGCAAAACTGAGCCGAGGCCCCAAAACGCGTTTTTAGCCAAAAACTGTGATGGT
193 GCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGGT
* * * ** *
3994 TAGTACACGATTTCGGCAAAATATTGAGCCGAAAACTTTCATCTCAATTTTTTACACAATACTAT
258 TAGTACACGATTTCGGCTAAATATTGACCCGAAAACTTTCTTCTCAATTTTTGCCACAATACTCT
* * *
4059 GAAAAAATATGTAATTCAATGCCAAAAAGATTGACGTGATTTTCACGCTTCTAATATCGTTCTTC
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTTC
* *
4124 CATTTTTTTGTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACA
66 CA--TTTTT-TTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACA
* * *
4189 AATCCTTATATCCAATGTGGATGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTTTTTGC
128 AATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGC
* * **
4254 GCCAAAAACCATGCAAATCTGAGTCGAGGCTCTGAAACGCGTTTTTAGAAAAAAAAAAAACTGTG
193 GCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAG-----CCAAAAACTGTG
* * * * * *
4319 ATGATTAGTACACGATTTCGGTTAAAAACTGACCCGAAAAAGTATTTTTCTCAATTTTTTGCCAC
253 ATGGTTAGTACACGATTTCGGCTAAATATTGACCCG-AAAACT-TTCTTCTCAA-TTTTTGCCAC
* *
4384 GATACTCG
315 AATACTCT
* ** * * ***** * * * * * *
4392 GAAAAAATTTATCGTTTTTCTATGTTTTTTACGCTTCTAATATCGT--TTTTCCAAAAAGATT-G
1 GAAAAAA--TAT-ATAATTCAACG-CCAAAAAG-AT-T--GA-CGTAATTTT-C---ACGCTTCT
** * * * * * * *
4454 ACGGGAT-TTTCTTGC-TTCTTATATCCGAATTAATTTCTAATTAAATCGAAACAACATTTAGAT
53 A--ATATCGTTCTTCCATT-TTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGAT
* * * * ** * *
4517 GATCGTAAAAGCAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAAATGATTATAGATTTTTC
115 GCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTC
* ** * * *
4582 AAGGAGTTTTTATGCCAAAAACCATGCATAACTGAGTCGAAGG-CCGGAAACGCGTTTTTAGCAA
180 AAGGAGTCTTTGCGCCAAAAACCATGCAAAACTGAGTCG-AGGCCCTGAAACGCGTTTTTAGC-C
* * * * * *
4646 AAAAACTGTGGTGGTTAGTACACGATTTTGGCTAAAAACTGACCCGAAAAAGTTTTTTCCTCAAT
243 AAAAACTGTGATGGTTAGTACACGATTTCGGCTAAATATTGACCCG-AAAACTTTCTT-CTCAAT
*
4711 TCTTTGCCACAATACTCG
306 T-TTTGCCACAATACTCT
* * ** * *
4729 GAAAAAATATATAATTGAACGCCAAAAATATTGACG-ACATTTTCTTGCTTCTAATATTGTTTTT
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTA-ATTTTCACGCTTCTAATATCGTTCTT
* * * *
4793 CCATTTTTTTTCCGAA-TCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAGCAA
65 CCATTTTTTTTCCGAATTC-ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
*
4857 ATCCTTATATCCAA------T---A------T--A-G--T-T--AT-TTT-AAGGAGTCTTTGCT
129 ATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCG
** * * ** * *
4897 CCAAAATTCATGCATAATTGAG-CAG-GGACTCC-GGGACACGTTTTTAGCCAAAAACCGTGATG
194 CCAAAAACCATGCAAAACTGAGTC-GAGG-C-CCTGAAACGCGTTTTTAGCCAAAAACTGTGATG
** * * * * * *
4959 GTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGACCCGACAAGTTT-TTCCCCAATTATT
256 GTTAGTACACGATTTCGGC-TAAA---T------ATTGACCCGAAAACTTTCTT-CTCAATT-TT
* *
5023 TGTCACAATACTCA
309 TGCCACAATACTCT
* * ** * * * *** * *
5037 GGAAAAACATATAATTCAACAACAAAAAAAATGAAGGGTTTTTTACGATTCTAATATCGTT-TTC
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTT-
* * * *
5101 CCATGTTTTTT--GAATTCATTTCTAATTAAATCGAAACAAAATTCTGATGATCGTAAAAACAAA
65 CCATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * ** * **
5164 ACCTTAAATCCAACGTGGATGAGATTTGGTTTAATGATTATAGATATTTCAAGGAGTCTTTTTAT
130 TCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC--TTTGC
** *
5229 GCCAAAAACCATGCAAAACTGAGTCGAGGCCCCAAAACGCGTTTTTAGCCAAAAACTATGATGGT
193 GCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGGT
* *
5294 TAGTACACGATTTCGGCTAAATGTTGACCCGAAAACTTTCATCTCAATTTTTGCCAACAATACTC
258 TAGTACACGATTTCGGCTAAATATTGACCCGAAAACTTTCTTCTCAATTTTTGCC-ACAATACTC
5359 T
322 T
*
5360 GAAAAAATATGA-AATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTA
1 GAAAAAATAT-ATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTT
*
5424 CCATTTTTTTTGTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
65 CCA---TTTTT-TTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* *
5489 CAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGACTCTTT
126 CAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
**
5554 GCGCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGAAATAAAAAAAACTG
191 GCGCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAG-----CCAAAAACTG
* * * * * * *
5619 TGATAGTTAGTACACAATTTCGGCTAAAAACTGACACGAAAAAGTTTTTTTCTCAATTTTTTGCC
251 TGATGGTTAGTACACGATTTCGGCTAAATATTGACCCG-AAAA-CTTTCTTCTCAA-TTTTTGCC
* *
5684 CCAATACTCG
313 ACAATACTCT
* ** * *
5694 GAAAAAATATATAATTCAACGTCAAAAAGATTGACG-ACATTTTCTTGCTTCCAATATCATT-TT
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTA-ATTTTCACGCTTCTAATATCGTTCTT
* ** * * *
5757 CCCA-TTTTTTTCTGAATAAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAATAACAA
65 -CCATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
* * *
5821 ATCCTTATATCCAATGTGG-TAGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTTTGC
129 ATCCTTATATCCAATGTGGCT-GAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGC
* * * ** * * ** * *
5885 GCC-TAAATCAAGCATGATTGAG-C-AGGGACTCTGGGACACGTTTTTAGCCAAAAACCGTGATG
193 GCCAAAAACCATGCAAAACTGAGTCGA-GG-CCCTGAAACGCGTTTTTAGCCAAAAACTGTGATG
*** * * * * *
5947 GTTAGTATGTGAATTAGGCTTAAATTTTGCAAAAACTGACCCAACAAGTTT-TTCCTCAATTATT
256 GTTAGTACACGATTTCGGC-TAAATATTG-----AC---CCGAA-AACTTTCTT-CTCAATT-TT
* *
6011 TGTCACAATACTCA
309 TGCCACAATACTCT
* ** * * * *
6025 GAAAAAATATATAATTCAACGACAAAATATTTTGAAGGT--TTTTTACGATTCAAATATCGTT-T
1 GAAAAAATATATAATTCAACGCCAAAA-AGATTG-ACGTAATTTTCACGCTTCTAATATCGTTCT
* * * * *
6087 TCCA--TGTTTTCTGAATTCATTTCTAAATAAATCGAAACAAAAGTT-AGATGATCGTAAAAACA
64 TCCATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGA-TTCAGATGCTCGTAAAAACA
* * * *
6149 AATCCTTAAATCCATTGTGGCTGAGATTTGGTTTC-ATGATTATAGATATTTCAAGGAGTCTTTA
128 AATCCTTATATCCAATGTGGCTGAGATTTGG-TTCGATGAATATAGATATTTCAAGGAGTCTTTG
* * * * *
6213 TGCCAAAAACCATGCAAAACTTAGTCGAGGCCC-AAAACGCGTTTTTACCCCAAAACTGTGATGG
192 CGCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGG
* * *
6277 TTAGTACACGATTTCGGCTTAATATTGACCCGAAAACTTTCATCTCAATTTTTTGCCACAATACC
257 TTAGTACACGATTTCGGCTAAATATTGACCCGAAAACTTTCTTCTCAA-TTTTTGCCACAATACT
6342 CT
321 CT
* * * * * *
6344 GAAAAAATTTGTAATTCAATGCCAAAAAGATTGACGTGATTTTCACGCTTCTAACATTGTTCTTC
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTTC
* * *
6409 CATTTTTTTTCCGAATTTATTTTTAATTAAATCGAAACCAGATTCAGATGCTCGTAAAAAACAAA
66 CATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAAACAAA
* * *
6474 TCCTTATATCCAATGTGGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAATCGTTGCGC
130 TCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGC
* ** * * **
6539 TAAAAACGTTGCAAATCTGAGTCGAGGCCCTGAAATGCGTTTTTAGAAGAAAAAAAAC-GTGATG
195 CAAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTT---AG-CCAAAAACTGTGATG
* * * *
6603 GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAAGTTGTTTTCTCAATTTTTTGCCACAAT
256 GTTAGTACACGATTTCGGCTAAATATTGACCCG-AAAACTT-TCTTCTCAA-TTTTTGCCACAAT
*
6668 ACTCG
318 ACTCT
*
6673 GAAAAAATATATAATTCAACGCCAAAAAGATTGACG-ATATTTTC-CTGCTTCTAATATCGTTTT
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTA-ATTTTCAC-GCTTCTAATATCGTTCT
* *
6736 TCCA-TTTTTTTCCGAA-TCAATTGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACA
64 TCCATTTTTTTTCCGAATTC-ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACA
* * * * *
6799 AATCCTTATATCCAATGTGGTTGAGATATGATTCGATGAATATAGTTATTTCAAGGAGTCTATGC
128 AATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGC
** * * ** *
6864 GCCAAAATTCATGCATAATTGAG-C-AGGGACTCC-GGGACTCGTTTTTAG-C--AAACTGTGAT
193 GCCAAAAACCATGCAAAACTGAGTCGA-GG-C-CCTGAAACGCGTTTTTAGCCAAAAACTGTGAT
** * * * * *
6923 GGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGACCCGACAAGTTT-TTCCTCAATTAT
255 GGTTAGTACACGATTTCGGC-TAAA---T------ATTGACCCGAAAACTTTCTT-CTCAATT-T
*
6987 TTGTCACAATACTCT
308 TTGCCACAATACTCT
* * * *** * * *
7002 GAAAAAATATATAATTCAACGACAAAAAAATTGAAGGGCTTTTTACGATTCTAATATCGTTTTTC
1 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTTC
* * * *
7067 CATGTTTTTT--GAATTCATTTCTAATTAAATTGAAACAAAATTCAGATGATCGTAAAAACAAAT
66 CATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT
* * * * * * **
7130 CTTTAAATCAAATGTGGTTGAGATTTGGTTTGATGATTATAGATATTTCAAGGAGTCTTTATGCC
131 CCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCC
*
7195 AAAAACCATGCAAAACTGAGTCGAGGCCCTAAAACGCGTTTTTAGCC-AAAA-----A---TT-G
196 AAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAG
* * *
7250 T--ACGATTTCGGCTAAATATTGACCCGAAAACTTTCATCTCAATTTTTTCCAACAATACTCA
261 TACACGATTTCGGCTAAATATTGACCCGAAAACTTTCTTCTCAATTTTTGCC-ACAATACTCT
* ** * *
7311 GAAAAAATATGTAATTCAACGTTAAAAA-ATCGAAAC-AAGATTTTCACGCTTCTAATATCGTTC
1 GAAAAAATATATAATTCAACGCCAAAAAGATTG--ACGTA-ATTTTCACGCTTCTAATATCGTTC
* *
7374 TTCCATTTTTTTTTCCAAATTTATTT-TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC
63 TTCCA-TTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC
* * *
7438 AAATCCTTATATCCAATGTGGCTGAAATTTGGTTCTATAAATATAGATATTTCAAG
127 AAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAG
Statistics
Matches: 2749, Mismatches: 497, Indels: 385
0.76 0.14 0.11
Matches are distributed among these distances:
299 2 0.00
300 27 0.01
301 47 0.02
302 5 0.00
303 2 0.00
305 1 0.00
306 54 0.02
307 4 0.00
308 86 0.03
309 63 0.02
310 36 0.01
311 8 0.00
312 83 0.03
313 8 0.00
315 2 0.00
317 4 0.00
318 11 0.00
319 119 0.04
320 22 0.01
321 26 0.01
322 58 0.02
323 195 0.07
324 25 0.01
325 145 0.05
326 80 0.03
327 188 0.07
328 228 0.08
329 515 0.19
330 95 0.03
331 93 0.03
332 62 0.02
333 92 0.03
334 80 0.03
335 14 0.01
336 15 0.01
337 79 0.03
338 1 0.00
339 1 0.00
340 4 0.00
341 148 0.05
342 8 0.00
343 1 0.00
344 10 0.00
345 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (322 bp):
GAAAAAATATATAATTCAACGCCAAAAAGATTGACGTAATTTTCACGCTTCTAATATCGTTCTTC
CATTTTTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT
CCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCC
AAAAACCATGCAAAACTGAGTCGAGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGGTTAG
TACACGATTTCGGCTAAATATTGACCCGAAAACTTTCTTCTCAATTTTTGCCACAATACTCT
Found at i:6819 original size:979 final size:981
Alignment explanation
Indices: 4869--7493 Score: 4191
Period size: 979 Copynumber: 2.7 Consensus size: 981
4859 CCTTATATCC
* *
4869 AATATAGTTATTTTAAGGAGTCTTTGCTCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
1 AATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
4934 ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
* * * *
4999 CCGACAAGTTTTTCCCCAATTATTTGTCACAATACTCAGGAAAAACATATAATTCAACAACAAAA
131 CCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAA
*
5064 AAAATGAAGGGTTTTTTACGATTCTAATATCGTTTTCCCATGTTTTTTGAATTCATTTCTAATTA
196 AAATTGAAGGGTTTTTTACGATTCTAATATCGTTTT-CCATGTTTTTTGAATTCATTTCTAATTA
* * *
5129 AATCGAAACAAAATTCTGATGATCGTAAAAACAAAACCTTAAATCCAACGTGGATGAGATTTGGT
260 AATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGATGAGATTTGGT
5194 TTAATGATTATAGATATTTCAAGGAGTCTTTTTATGCCAAAAACCATGCAAAACTGAGTCGAGGC
325 TTAATGATTATAGATATTTCAAGGAGTC--TTTATGCCAAAAACCATGCAAAACTGAGTCGAGG-
* *
5259 CCCAAAACGCGTTTTTAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAATGTTGACCC
387 CCCAAAACGCGTTTTTA-CCCAAAACT-TGATGGTTAGTACACGATTTCGGCTAAATATTGACCC
*
5324 GAAAACTTTCATCTCAA-TTTTTGCCAACAATACTCTGAAAAAATATGAAATTCAACGCCAAAAA
450 GAAAACTTTCATCTCAATTTTTTGCCAACAATACTCTGAAAAAATATGTAATTCAACGCCAAAAA
* * *
5388 GATTGACGTAATTTTCACGCTTCTAATATCGTTCTACCATTTTTTTTGTTTCCGAATTTATTTCT
515 GATTGACGTGATTTTCACGCTTCTAATATCGTTCTTCCA--TTTTTT-TTTCCGAATTTATTTTT
5453 AATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGAT
577 AATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGAT
* *
5518 TTGGTTCGATAAATATAGATATTTCAAGGACTCTTTGCGCCAAAAACCATGCAAAACTGAGTCGA
642 TTGGTTCGATAAATATAGATATTTCAAGGAATCGTTGCGCCAAAAACCATGCAAAACTGAGTCGA
*
5583 GGCCCTGAAACGCGTTTTTAGAAATAAAAAAAACTGTGATAGTTAGTACACAATTTCGGCTAAAA
707 GGCCCTGAAACGCGTTTTTAGAAAGAAAAAAAACTGTGATAGTTAGTACACAATTTCGGCTAAAA
* *
5648 ACTGACACGAAAAAGTTTTTTTCTCAATTTTTTGCCCCAATACTCGGAAAAAATATATAATTCAA
772 ACTGACACGAAAAAGTTGTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTCAA
* * *
5713 CGTCAAAAAGATTGACGACATTTTCTTGCTTCCAATATCATTTTCCCATTTTTTTCTGAATAAAT
837 CGCCAAAAAGATTGACGACATTTTCCTGCTTCCAATATCATTTTCCCATTTTTTTCCGAATAAAT
*
5778 TGCTAATTAAATCGAAACAAGATTCAGATGCACGTAATAACAAATCCTTATATCCAATGTGGTAG
902 TGCTAATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGTAG
5843 AGATATGATTCGATG
967 AGATATGATTCGATG
* * * *
5858 AATATAGTTATTTCAAGGAGTCTTTGCGCCTAAA-TCAAGCATGATTGAGCAGGGACTCTGGGAC
1 AATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
*
5922 ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGTGAATTAGGCTTAAATTTTGCAAAAACTGAC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
*
5987 CCAACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAA
131 CCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAA
** * * *
6052 TATTTTGAA-GGTTTTTTACGATTCAAATATCGTTTTCCATGTTTTCTGAATTCATTTCTAAATA
196 -AAATTGAAGGGTTTTTTACGATTCTAATATCGTTTTCCATGTTTTTTGAATTCATTTCTAATTA
* *
6116 AATCGAAACAAAAGTT-AGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGG
260 AATCGAAACAAAA-TTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGATGAGATTTGG
* *
6180 TTTCATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTTAGTCGAGGCC
324 TTTAATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGTCGAGGCC
*
6245 CAAAACGCGTTTTTACCCCAAAACTGTGATGGTTAGTACACGATTTCGGCTTAATATTGACCCGA
389 CAAAACGCGTTTTTA-CCCAAAACT-TGATGGTTAGTACACGATTTCGGCTAAATATTGACCCGA
* * *
6310 AAACTTTCATCTCAATTTTTTGCC-ACAATACCCTGAAAAAATTTGTAATTCAATGCCAAAAAGA
452 AAACTTTCATCTCAATTTTTTGCCAACAATACTCTGAAAAAATATGTAATTCAACGCCAAAAAGA
* *
6374 TTGACGTGATTTTCACGCTTCTAACATTGTTCTTCCA-TTTTTTTTCCGAATTTATTTTTAATTA
517 TTGACGTGATTTTCACGCTTCTAATATCGTTCTTCCATTTTTTTTTCCGAATTTATTTTTAATTA
*
6438 AATCGAAACCAGATTCAGATGCTCGTAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGG
582 AATCGAAACAAGATTCAGATGCTCGT-AAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGG
* ** *
6503 TTCGATAAATATAGATATTTCAAGGAATCGTTGCGCTAAAAACGTTGCAAATCTGAGTCGAGGCC
646 TTCGATAAATATAGATATTTCAAGGAATCGTTGCGCCAAAAACCATGCAAAACTGAGTCGAGGCC
* * *
6568 CTGAAATGCGTTTTTAG-AAGAAAAAAAAC-GTGATGGTTAGTACACGATTTCGGCTAAAAACTG
711 CTGAAACGCGTTTTTAGAAAGAAAAAAAACTGTGATAGTTAGTACACAATTTCGGCTAAAAACTG
*
6631 ACCCGAAAAAGTTGTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCC
776 ACACGAAAAAGTTGTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCC
* * * * *
6696 AAAAAGATTGACGATATTTTCCTGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATCAATTGCT
841 AAAAAGATTGACGACATTTTCCTGCTTCCAATATCATTTTCCCATTTTTTTCCGAATAAATTGCT
*
6761 AATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGTTGAGAT
906 AATTAAATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGTAGAGAT
6826 ATGATTCGATG
971 ATGATTCGATG
*
6837 AATATAGTTATTTCAAGGAGTCTATGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
1 AATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
* *
6902 TCGTTTTTAG-C--AAACTGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
66 ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
*
6964 CCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCTGAAAAAATATATAATTCAACGACAAAA
131 CCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAA
*
7029 AAATTGAAGGGCTTTTTACGATTCTAATATCGTTTTTCCATGTTTTTTGAATTCATTTCTAATTA
196 AAATTGAAGGGTTTTTTACGATTCTAATATCG-TTTTCCATGTTTTTTGAATTCATTTCTAATTA
* * * *
7094 AATTGAAACAAAATTCAGATGATCGTAAAAACAAATCTTTAAATCAAATGTGGTTGAGATTTGGT
260 AATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGATGAGATTTGGT
*
7159 TTGATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGTCGAGGCCC
325 TTAATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGTCGAGGCCC
*
7224 TAAAACGCGTTTTTAGCCAAAA----A---TT-GT--ACGATTTCGGCTAAATATTGACCCGAAA
390 -AAAACGCGTTTTTACCCAAAACTTGATGGTTAGTACACGATTTCGGCTAAATATTGACCCGAAA
* ** *
7279 ACTTTCATCTCAATTTTTT-CCAACAATACTCAGAAAAAATATGTAATTCAACGTTAAAAA-ATC
454 ACTTTCATCTCAATTTTTTGCCAACAATACTCTGAAAAAATATGTAATTCAACGCCAAAAAGATT
** *
7342 GAAACAAGATTTTCACGCTTCTAATATCGTTCTTCCATTTTTTTTTCCAAATTTA-TTTTAATTA
519 G--ACGTGATTTTCACGCTTCTAATATCGTTCTTCCATTTTTTTTTCCGAATTTATTTTTAATTA
*
7406 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAAATTTGGT
582 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGT
*
7471 TCTATAAATATAGATATTTCAAG
647 TCGATAAATATAGATATTTCAAG
Statistics
Matches: 1520, Mismatches: 103, Indels: 48
0.91 0.06 0.03
Matches are distributed among these distances:
966 5 0.00
967 138 0.09
968 64 0.04
969 18 0.01
970 2 0.00
973 1 0.00
976 6 0.00
977 135 0.09
978 156 0.10
979 272 0.18
980 93 0.06
981 118 0.08
984 146 0.10
985 41 0.03
987 110 0.07
988 179 0.12
989 36 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (981 bp):
AATATAGTTATTTCAAGGAGTCTTTGCGCCAAAATTCATGCATAATTGAGCAGGGACTCCGGGAC
ACGTTTTTAGCCAAAAACCGTGATGGTTAGTATGCGAATTAGGCTTAAATTTTGCAAAAACTGAC
CCGACAAGTTTTTCCTCAATTATTTGTCACAATACTCAGAAAAAATATATAATTCAACGACAAAA
AAATTGAAGGGTTTTTTACGATTCTAATATCGTTTTCCATGTTTTTTGAATTCATTTCTAATTAA
ATCGAAACAAAATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGATGAGATTTGGTT
TAATGATTATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGTCGAGGCCCA
AAACGCGTTTTTACCCAAAACTTGATGGTTAGTACACGATTTCGGCTAAATATTGACCCGAAAAC
TTTCATCTCAATTTTTTGCCAACAATACTCTGAAAAAATATGTAATTCAACGCCAAAAAGATTGA
CGTGATTTTCACGCTTCTAATATCGTTCTTCCATTTTTTTTTCCGAATTTATTTTTAATTAAATC
GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGA
TAAATATAGATATTTCAAGGAATCGTTGCGCCAAAAACCATGCAAAACTGAGTCGAGGCCCTGAA
ACGCGTTTTTAGAAAGAAAAAAAACTGTGATAGTTAGTACACAATTTCGGCTAAAAACTGACACG
AAAAAGTTGTTTTCTCAATTTTTTGCCACAATACTCGGAAAAAATATATAATTCAACGCCAAAAA
GATTGACGACATTTTCCTGCTTCCAATATCATTTTCCCATTTTTTTCCGAATAAATTGCTAATTA
AATCGAAACAAGATTCAGATGCACGTAAAAACAAATCCTTATATCCAATGTGGTAGAGATATGAT
TCGATG
Done.