Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016520.1 Corchorus olitorius cultivar O-4 contig16553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 36943
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:4860 original size:15 final size:16

Alignment explanation


    Indices: 4837--4866  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       4827 CACAAAAGAC

                            
       4837 AAAACAAACAAAGTAG
          1 AAAACAAACAAAGTAG

                           
       4853 AAAA-AAACAAAGTA
          1 AAAACAAACAAAGTA

       4867 CCTCTTCTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.73, C:0.10, G:0.10, T:0.07


Consensus pattern (16 bp):   
AAAACAAACAAAGTAG

Found at i:19997 original size:13 final size:13

Alignment explanation


    Indices: 19981--20005  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      19971 GATAAAACGA

                         
      19981 ATCGATTTCAACC
          1 ATCGATTTCAACC

                        
      19994 ATCGATTTCAAC
          1 ATCGATTTCAAC

      20006 TGTGAGACTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32


Consensus pattern (13 bp):   
ATCGATTTCAACC
Done.