Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016526.1 Corchorus olitorius cultivar O-4 contig16559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49865

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1033
10
4.3
11
80
8
58
33
8
0
57
1.30
7718--7766
22
2.2
22
89
7
73
44
18
28
8
1.78
10008--10050
14
3.0
14
86
10
52
48
0
13
37
1.43
20936--21070
73
1.9
72
92
4
229
52
12
8
26
1.67
21843--21874
12
2.7
12
95
0
55
53
0
28
18
1.45
22200--22246
23
2.0
24
83
4
60
21
8
19
51
1.73
23595--23647
25
2.2
24
84
12
74
35
5
9
49
1.59
23604--23656
25
2.1
25
96
0
97
30
3
13
52
1.57
29059--29160
51
2.0
51
98
0
195
37
16
17
28
1.92
29373--29477
52
2.0
51
92
1
174
39
20
6
33
1.79
40502--40531
15
2.0
15
93
0
51
26
23
20
30
1.98
48954--49071
62
1.9
61
94
1
209
32
21
15
31
1.94
49120--49181
28
2.2
28
97
2
117
24
19
11
45
1.83

Tables:   1

The End!