Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016527.1 Corchorus olitorius cultivar O-4 contig16560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55513

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1642--1685
21
2.1
21
83
8
54
25
6
45
22
1.77
10398--10428
14
2.2
14
100
0
62
29
12
12
45
1.80
11964--11993
5
6.2
5
96
3
53
83
0
16
0
0.65
28575--28687
57
2.0
57
91
0
181
31
15
21
31
1.94
30864--30944
39
2.0
40
92
2
137
37
3
8
50
1.51
34665--34704
1
40.0
1
84
0
53
92
0
5
2
0.45
45048--45299
138
1.8
138
92
0
423
42
9
12
34
1.76
47776--47816
15
2.6
16
84
7
57
51
0
0
48
1.00
47773--47824
10
5.1
10
77
13
61
51
0
0
48
1.00
47773--47827
12
4.2
12
75
20
56
52
0
0
47
1.00
51376--51451
36
2.1
36
100
0
152
30
31
7
30
1.86
53906--53933
13
2.2
13
100
0
56
35
14
14
35
1.86
55314--55375
30
2.1
30
96
0
115
45
4
24
25
1.73

Tables:   1

The End!