Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016531.1 Corchorus olitorius cultivar O-4 contig16564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93481

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8239--8408
85
2.0
85
98
0
331
54
5
11
28
1.58
16101--16140
19
2.2
18
90
4
62
32
0
0
67
0.91
20035--20095
32
1.9
32
93
6
106
47
6
19
26
1.74
21296--21448
22
7.0
21
77
8
153
36
10
16
35
1.84
21298--21445
66
2.2
66
86
4
201
37
10
14
37
1.82
21487--21584
39
2.5
39
93
0
160
31
10
19
38
1.85
21488--21603
39
3.0
38
87
7
153
34
9
19
36
1.85
21608--21792
22
8.5
21
69
17
94
42
10
13
33
1.79
21687--21879
44
4.4
44
76
7
171
42
11
13
32
1.81
21688--21878
22
8.7
22
74
9
124
42
11
13
32
1.80
21933--22364
22
19.9
22
70
12
207
38
9
15
36
1.79
21982--22408
44
9.8
43
72
14
272
38
9
15
36
1.80
21982--22408
66
6.5
66
71
11
254
38
9
15
36
1.80
22148--22227
23
3.5
23
89
1
108
37
6
16
40
1.74
23240--23264
12
2.1
12
100
0
50
60
0
16
24
1.36
29539--29564
13
2.0
13
100
0
52
38
0
7
53
1.30
29591--29676
43
2.0
43
97
0
163
27
17
18
36
1.94
29646--29715
34
2.1
34
97
0
131
25
10
28
35
1.88
29684--30174
196
2.4
202
87
8
672
32
25
21
21
1.98
35700--35778
31
2.5
31
82
8
106
34
17
15
32
1.91
36133--36181
17
2.9
16
85
8
62
22
20
22
34
1.97
40653--40779
31
4.2
31
80
2
123
14
23
26
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46459--46513
29
1.9
28
88
3
83
27
18
7
47
1.74
46459--46523
29
2.2
29
81
5
78
29
16
9
44
1.79
54655--54841
84
2.2
86
84
5
252
23
9
47
19
1.78
54952--54988
17
2.2
17
90
0
56
24
0
75
0
0.80
54957--54994
12
3.2
12
85
7
51
28
0
71
0
0.87
80264--80520
128
2.0
129
98
0
498
48
15
17
18
1.81
82936--83054
56
2.1
56
92
0
202
30
21
16
31
1.96
86359--86448
47
1.9
47
95
0
162
31
21
27
20
1.98

Tables:   1

The End!