Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016533.1 Corchorus olitorius cultivar O-4 contig16566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61147

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
350--450
31
3.3
31
73
5
98
32
10
23
32
1.90
2199--2375
88
2.0
88
93
0
300
35
14
15
33
1.89
12050--12086
18
2.2
18
85
9
51
0
27
2
70
1.01
11085--13565
569
4.4
567
84
4
3035
31
20
14
33
1.92
13648--15659
559
3.6
557
88
3
3004
31
18
13
35
1.91
19139--19232
37
2.5
37
91
0
152
36
15
12
35
1.86
19892--21882
565
3.5
564
83
3
2468
29
19
15
34
1.93
24853--25172
174
1.8
175
83
8
425
34
13
17
34
1.89
26164--26252
46
2.1
40
76
21
108
38
21
5
34
1.77
27952--27992
16
2.6
16
100
0
82
48
9
7
34
1.64
28183--28215
11
3.0
11
87
12
50
36
27
0
36
1.57
35210--35429
22
10.1
21
71
12
133
31
10
17
40
1.84
35286--35429
65
2.2
64
82
8
173
32
11
15
40
1.83
35217--35429
87
2.5
86
81
4
214
31
10
16
40
1.83
36894--36978
40
2.2
40
87
8
129
55
17
10
16
1.69
37812--37897
41
2.1
41
95
0
154
40
18
4
36
1.72
47890--47950
26
2.2
28
80
11
72
50
1
1
45
1.21
47918--47969
22
2.4
21
75
12
52
50
3
1
44
1.31
52647--52713
33
2.0
33
97
0
125
23
22
11
41
1.87
55390--55439
20
2.5
20
83
0
73
8
10
26
56
1.60
55497--55561
33
1.9
35
93
6
116
30
21
20
27
1.98
56530--56568
21
1.9
20
84
5
51
58
0
15
25
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56962--57594
162
3.9
162
91
0
1027
28
19
24
27
1.99
57964--58001
18
2.1
19
85
5
51
34
2
23
39
1.69
59583--59609
8
3.4
8
100
0
54
11
0
0
88
0.50

Tables:   1

The End!