Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016535.1 Corchorus olitorius cultivar O-4 contig16568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73375

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
176--245
36
1.9
36
91
0
113
21
10
8
60
1.55
1262--1345
42
2.0
40
90
4
132
38
3
7
51
1.47
2281--2362
32
2.6
32
98
1
157
30
8
12
48
1.70
4769--5035
92
2.9
89
87
4
372
25
19
10
45
1.81
28691--28716
11
2.4
11
100
0
52
38
19
0
42
1.51
56161--56207
21
2.2
21
88
0
67
40
4
23
31
1.74
59394--59576
53
3.5
53
79
0
177
21
22
19
36
1.95
60870--60902
1
33.0
1
93
0
57
96
0
0
3
0.20
71091--71122
10
3.4
10
83
16
50
68
9
0
21
1.17
73321--73375
25
2.3
24
87
6
76
29
5
3
61
1.35

Tables:   1

The End!