Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016539.1 Corchorus olitorius cultivar O-4 contig16572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68413

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
557--603
21
2.2
21
85
7
60
36
0
53
10
1.36
2813--2856
2
23.0
2
90
9
74
50
0
0
50
1.00
3899--3946
2
24.5
2
91
4
80
50
0
0
50
1.00
8426--8501
12
6.7
11
70
15
57
44
1
1
52
1.17
8451--8494
23
2.0
23
86
13
65
43
2
0
54
1.12
8426--8501
22
3.3
23
75
15
77
44
1
1
52
1.17
9002--9057
20
2.8
20
88
2
76
55
7
1
35
1.38
9024--9067
13
3.4
13
87
0
70
61
2
0
36
1.09
12327--12367
8
4.9
8
85
11
55
39
19
0
41
1.52
12330--12368
18
2.2
18
100
0
78
41
20
0
38
1.53
14569--14885
156
2.0
156
90
1
492
20
17
34
28
1.95
14770--15265
260
1.9
260
89
0
778
27
19
27
25
1.99
19699--19742
20
2.2
20
80
15
56
63
11
11
13
1.52
25463--25507
8
5.9
8
82
10
58
35
20
2
42
1.64
25458--25508
22
2.3
22
89
0
84
37
19
3
39
1.70
29125--29310
22
8.6
21
75
9
126
34
15
11
38
1.83
29252--29311
21
2.9
21
87
9
95
23
23
13
40
1.90
33149--33197
25
2.0
25
87
0
71
46
4
18
30
1.67
34524--34548
4
6.2
4
100
0
50
24
0
0
76
0.80
34607--34655
25
2.0
24
84
11
64
44
8
2
44
1.45
41271--41352
42
2.0
42
95
0
146
40
3
24
31
1.72
44499--44523
7
3.6
7
100
0
50
40
12
0
48
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45251--45303
26
2.0
26
100
0
106
66
3
11
18
1.38
45954--45994
21
2.0
21
100
0
82
36
4
0
58
1.20
51794--51887
30
3.1
30
77
10
93
36
7
21
35
1.81
57155--57212
29
2.0
30
86
3
82
41
12
12
34
1.79
62106--62237
52
3.0
41
78
21
165
38
21
10
29
1.87
62123--62227
52
2.0
52
100
0
210
40
20
11
26
1.87
63230--63586
197
1.8
197
88
2
558
20
15
20
44
1.87

Tables:   1

The End!