Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016540.1 Corchorus olitorius cultivar O-4 contig16573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  238745

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
263--294
2
16.0
2
100
0
64
50
0
0
50
1.00
12323--12349
7
3.9
7
100
0
54
44
0
0
55
0.99
12329--12367
16
2.4
16
87
8
53
41
0
5
53
1.23
12625--12679
22
2.5
22
82
5
67
47
9
9
34
1.67
12667--12736
22
3.2
22
79
0
77
38
12
15
32
1.86
12988--13061
25
3.0
25
95
0
139
12
31
20
36
1.89
13416--13872
22
21.5
21
65
16
117
37
14
7
40
1.74
13562--13731
65
2.6
67
82
4
193
40
14
7
38
1.73
13607--13689
43
1.9
43
85
0
112
43
15
7
33
1.74
15475--15504
2
15.0
2
100
0
60
0
50
0
50
1.00
28507--28549
13
3.2
13
77
6
50
65
9
16
9
1.47
32745--32814
23
3.1
21
76
15
68
60
0
10
30
1.30
32753--32814
23
2.7
23
80
7
72
59
0
11
29
1.32
42306--42342
17
2.1
18
85
14
51
43
16
21
18
1.88
43204--43248
20
2.2
20
84
7
56
31
4
17
46
1.68
44041--44069
2
14.5
2
100
0
58
48
0
0
51
1.00
46264--46314
22
2.4
21
81
12
59
50
3
1
43
1.31
55122--55167
23
2.0
22
87
4
65
34
0
0
65
0.93
55124--55167
6
7.5
6
92
5
63
36
0
0
63
0.95
58133--58173
15
2.7
15
100
0
82
41
17
7
34
1.77
61798--61942
72
2.0
72
95
0
263
24
17
30
27
1.97
62422--62473
23
2.3
23
81
12
65
17
9
3
69
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66384--66426
19
2.3
19
80
8
52
27
2
2
67
1.15
70476--70537
31
2.0
32
83
3
81
58
11
17
12
1.63
76043--76161
60
2.0
60
91
0
193
25
26
26
22
2.00
83568--83604
6
6.2
6
87
0
56
18
64
2
13
1.39
83561--83602
18
2.3
18
91
0
66
21
61
4
11
1.48
84989--85014
4
6.5
4
100
0
52
76
0
0
23
0.78
85794--86250
228
2.0
227
97
0
869
27
19
13
40
1.88
90559--90633
22
3.4
21
78
10
80
37
8
9
45
1.66
90633--90726
23
4.2
23
86
4
113
39
17
6
37
1.75
90633--90739
23
4.9
22
84
5
101
37
16
6
39
1.75
94315--94342
2
14.0
2
100
0
56
50
0
0
50
1.00
94971--95216
124
1.9
127
88
7
374
39
10
1
48
1.45
96785--96809
5
5.0
5
100
0
50
80
0
0
20
0.72
135778--135808
2
15.5
2
100
0
62
51
0
0
48
1.00
137554--137607
27
2.0
27
100
0
108
37
3
18
40
1.69
138102--138130
7
4.1
7
100
0
58
13
41
0
44
1.44
139998--140047
3
16.7
3
80
0
55
28
38
0
34
1.57
154850--154874
13
1.9
13
100
0
50
36
24
8
32
1.84
155342--155458
56
2.0
59
90
8
188
34
23
1
41
1.65
155524--155612
42
2.1
41
93
2
151
30
6
16
46
1.73
161563--161926
190
1.9
190
86
2
516
32
18
14
34
1.91
172732--172772
21
2.0
21
90
4
66
51
19
4
24
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
200301--200366
33
1.9
35
87
6
100
0
24
0
75
0.80
215780--215808
7
4.1
7
100
0
58
55
0
31
13
1.39
216608--216632
6
4.2
6
100
0
50
0
16
0
84
0.63
227534--227559
7
3.7
7
100
0
52
46
0
11
42
1.40
227756--227827
32
2.2
32
92
7
119
52
0
23
23
1.47

Tables:   1

The End!