Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016541.1 Corchorus olitorius cultivar O-4 contig16574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41685

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--274
15
2.3
15
89
5
50
63
0
12
24
1.28
206--458
129
1.9
130
85
1
346
50
2
10
36
1.52
228--484
131
2.0
129
82
3
309
50
3
10
35
1.53
823--903
39
2.1
39
100
0
162
33
7
24
34
1.83
21978--22013
18
1.9
19
88
5
56
22
44
5
27
1.75
37376--37409
6
5.3
6
86
13
50
50
14
14
20
1.78
37374--37403
14
2.1
14
100
0
60
50
13
13
23
1.77
37369--37419
14
3.8
13
77
12
50
50
9
13
25
1.72
37369--37419
20
2.6
20
85
14
79
50
9
13
25
1.72
39031--39090
31
1.9
31
100
0
120
46
13
0
40
1.43

Tables:   1

The End!