Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016544.1 Corchorus olitorius cultivar O-4 contig16577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140751
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1327 original size:32 final size:32
Alignment explanation
Indices: 1214--1328 Score: 97
Period size: 32 Copynumber: 3.6 Consensus size: 32
1204 ATCATGTTGG
* * * *
1214 TGATGTGGCAATGCCACGTCAGACCAAAATGA
1 TGATGTGGCATTGCCACATCGGACCAAACTGA
** * * * * * *
1246 TGACATGTCATTGTCACGTCGGACTAAACCGC
1 TGATGTGGCATTGCCACATCGGACCAAACTGA
* *
1278 TGATGT-GCATCGCCACATTGGACCAAACTGA
1 TGATGTGGCATTGCCACATCGGACCAAACTGA
1309 TGATGTGGCATTGCCACATC
1 TGATGTGGCATTGCCACATC
1329 AACGACATGA
Statistics
Matches: 60, Mismatches: 22, Indels: 2
0.71 0.26 0.02
Matches are distributed among these distances:
31 23 0.38
32 37 0.62
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (32 bp):
TGATGTGGCATTGCCACATCGGACCAAACTGA
Found at i:1444 original size:28 final size:29
Alignment explanation
Indices: 1367--1443 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
1357 ATCGCTTGAA
1367 AGGGAGCAAAATATCCAAAATTGAGAGTTC
1 AGGG-GCAAAATATCCAAAATTGAGAGTTC
* *
1397 AGGGGCAAGATGTCCAAAATTG-GAGTTC
1 AGGGGCAAAATATCCAAAATTGAGAGTTC
* *
1425 AATGGGCAAAACATCCAAA
1 -AGGGGCAAAATATCCAAA
1444 TGATACAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.15
29 30 0.75
30 4 0.10
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.18
Consensus pattern (29 bp):
AGGGGCAAAATATCCAAAATTGAGAGTTC
Found at i:9487 original size:15 final size:17
Alignment explanation
Indices: 9467--9501 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
9457 AAAAAATGTT
9467 GATGAGT-TGAGA-TGA
1 GATGAGTGTGAGATTGA
9482 GATGAGTGTGAGATTGA
1 GATGAGTGTGAGATTGA
9499 GAT
1 GAT
9502 TCAATCGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 5 0.28
17 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (17 bp):
GATGAGTGTGAGATTGA
Found at i:10932 original size:1 final size:1
Alignment explanation
Indices: 10926--10961 Score: 72
Period size: 1 Copynumber: 36.0 Consensus size: 1
10916 AAAATAATTT
10926 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10962 TCCTATGCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:29041 original size:20 final size:20
Alignment explanation
Indices: 28997--29042 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
28987 TTAAGGAAAC
*
28997 AACCCGTTGAAATCCGGTAT
1 AACCCGTTGAAAGCCGGTAT
*
29017 GACCCGTTGAAAGCCGG-ATT
1 AACCCGTTGAAAGCCGGTA-T
29037 AACCCG
1 AACCCG
29043 GTGACCCGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (20 bp):
AACCCGTTGAAAGCCGGTAT
Found at i:33442 original size:16 final size:16
Alignment explanation
Indices: 33394--33444 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
33384 GATGAGAGGA
*
33394 TGGAGTAATATAAATT
1 TGGATTAATATAAATT
33410 TGG-TATAGATGATAAATT
1 TGGAT-TA-AT-ATAAATT
33428 TGGATTAATATAAATT
1 TGGATTAATATAAATT
33444 T
1 T
33445 ACAGCTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 13 0.43
17 4 0.13
18 12 0.40
19 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (16 bp):
TGGATTAATATAAATT
Found at i:40645 original size:29 final size:29
Alignment explanation
Indices: 40602--40660 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
40592 ATCCATGTTT
*
40602 TTCTGCTCTGTTCTTCCTCTGTCTCGTTA
1 TTCTGCTCTGCTCTTCCTCTGTCTCGTTA
* *
40631 TTCTGCTCTGCTCTTCCTCTTTTTCGTTA
1 TTCTGCTCTGCTCTTCCTCTGTCTCGTTA
40660 T
1 T
40661 CGCAGAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.03, C:0.31, G:0.12, T:0.54
Consensus pattern (29 bp):
TTCTGCTCTGCTCTTCCTCTGTCTCGTTA
Found at i:41082 original size:31 final size:31
Alignment explanation
Indices: 41047--41209 Score: 132
Period size: 31 Copynumber: 5.3 Consensus size: 31
41037 GACGTGGCAT
*
41047 GCCACATGTACCAAAAAGCGACATGTTG-CAC
1 GCCACGTGTACCAAAAAGCGACATG-TGACAC
*
41078 GCCACGTGTGCCAAAAAGCGACATGTGACAC
1 GCCACGTGTACCAAAAAGCGACATGTGACAC
***
41109 GCCACGTGTACCAAAAAATAACATGT-ATCAC
1 GCCACGTGTACCAAAAAGCGACATGTGA-CAC
** * * * *
41140 GCCGTGTGTACCAAAAAGTGACACGTGGCAT
1 GCCACGTGTACCAAAAAGCGACATGTGACAC
* ** * * * *
41171 GCCATGTGTTTCAAAAAGTGACACGTGGCAT
1 GCCACGTGTACCAAAAAGCGACATGTGACAC
41202 GCCACGTG
1 GCCACGTG
41210 CATGAAAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
30 3 0.03
31 109 0.97
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.18
Consensus pattern (31 bp):
GCCACGTGTACCAAAAAGCGACATGTGACAC
Found at i:48245 original size:29 final size:29
Alignment explanation
Indices: 48203--48260 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
48193 GACACTCTGT
48203 CATTGGGGCTGCAATAGTACTAAAATTTC
1 CATTGGGGCTGCAATAGTACTAAAATTTC
48232 CATTGGGGCTGCAATAGTACTAAAATTTC
1 CATTGGGGCTGCAATAGTACTAAAATTTC
48261 GAATGAACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (29 bp):
CATTGGGGCTGCAATAGTACTAAAATTTC
Found at i:62589 original size:21 final size:19
Alignment explanation
Indices: 62563--62621 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
62553 CGCTGCTCTA
62563 ATAATCTCATCTGTACAAT
1 ATAATCTCATCTGTACAAT
* *
62582 ACCTAATCTAATCTGTACAGT
1 A--TAATCTCATCTGTACAAT
62603 ATAATCTCATCTGTACAAT
1 ATAATCTCATCTGTACAAT
62622 TGTTAAACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (19 bp):
ATAATCTCATCTGTACAAT
Found at i:70323 original size:180 final size:180
Alignment explanation
Indices: 70021--70379 Score: 596
Period size: 180 Copynumber: 2.0 Consensus size: 180
70011 CAATTCAAGA
*
70021 GAAGAGAAATGTACTCAAAGATTGATTCTGAAAGTGTAACTGTGCCACATGGTGTAAAAGATAAG
1 GAAGAGAAATGTACTCAAAGATTGATTCTCAAAGTGTAACTGTGCCACATGGTGTAAAAGATAAG
* * *
70086 GTGGCATCATGTGACAAGATGAAAATGAAGAACCAATTCGGTGAATGTATGAAGAAAGCAGAAAA
66 GTGGCATCATGTGACAAGATGAAAATGAAGAACCAAGTCAGTCAATGTATGAAGAAAGCAGAAAA
*
70151 GTTTCAAGAAGTTTTTCCAAAAGGTGCTAATAAAGATGCCACTGGAAAAC
131 GTTTCAAGAAGTTATTCCAAAAGGTGCTAATAAAGATGCCACTGGAAAAC
* *
70201 GAAGAGAAATGTACTCAAAGATTGGTTC-CAATAGTGTACCTGTGCCACATGGTGTAAAAGATAA
1 GAAGAGAAATGTACTCAAAGATTGATTCTCAA-AGTGTAACTGTGCCACATGGTGTAAAAGATAA
70265 GGTGGCATCATGTGACACA-ATGAAAATGAAGAACCAAGTCAGTCAATGTATGAAGAAAGCAGAA
65 GGTGGCATCATGTGACA-AGATGAAAATGAAGAACCAAGTCAGTCAATGTATGAAGAAAGCAGAA
* * *
70329 AAGTTTCAAGAAGTTATTCCTAAAGGTGCTAATCAAGATGCCAGTGGAAAA
129 AAGTTTCAAGAAGTTATTCCAAAAGGTGCTAATAAAGATGCCACTGGAAAA
70380 AGAAATACTG
Statistics
Matches: 167, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
179 2 0.01
180 164 0.98
181 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.23
Consensus pattern (180 bp):
GAAGAGAAATGTACTCAAAGATTGATTCTCAAAGTGTAACTGTGCCACATGGTGTAAAAGATAAG
GTGGCATCATGTGACAAGATGAAAATGAAGAACCAAGTCAGTCAATGTATGAAGAAAGCAGAAAA
GTTTCAAGAAGTTATTCCAAAAGGTGCTAATAAAGATGCCACTGGAAAAC
Found at i:75563 original size:29 final size:29
Alignment explanation
Indices: 75521--75609 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
75511 ACTGTGTAGA
75521 GTGCAACTTAATCTTTGGTGGCGTTCTCT
1 GTGCAACTTAATCTTTGGTGGCGTTCTCT
75550 GTGCAACTTAATCTTTGGTGGCGTTCTCT
1 GTGCAACTTAATCTTTGGTGGCGTTCTCT
*
75579 GTGCAACTTAATCTTTGGTGGCATTCTCT
1 GTGCAACTTAATCTTTGGTGGCGTTCTCT
75608 GT
1 GT
75610 TTTTCTTTAC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.42
Consensus pattern (29 bp):
GTGCAACTTAATCTTTGGTGGCGTTCTCT
Found at i:80494 original size:20 final size:20
Alignment explanation
Indices: 80469--80512 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
80459 TCCTCAAAAG
80469 GGGTTTTTGGTAAATTCTCT
1 GGGTTTTTGGTAAATTCTCT
80489 GGGTTTTTGGTAAATTCTCT
1 GGGTTTTTGGTAAATTCTCT
80509 GGGT
1 GGGT
80513 CTTTCAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.14, C:0.09, G:0.30, T:0.48
Consensus pattern (20 bp):
GGGTTTTTGGTAAATTCTCT
Found at i:87872 original size:23 final size:23
Alignment explanation
Indices: 87846--87894 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
87836 GGAATTCTTC
*
87846 TTTT-CTTTTTTGTGTTGTGAAAT
1 TTTTGCTTTTTTGTG-TATGAAAT
* *
87869 TTTTGGTTTTTTTTGTATGAAAT
1 TTTTGCTTTTTTGTGTATGAAAT
87892 TTT
1 TTT
87895 GGCAGGTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.14, C:0.02, G:0.16, T:0.67
Consensus pattern (23 bp):
TTTTGCTTTTTTGTGTATGAAAT
Found at i:96899 original size:6 final size:6
Alignment explanation
Indices: 96888--96917 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
96878 CAGTCTCAGC
96888 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
96918 ATACATCCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCCT
Found at i:96947 original size:45 final size:47
Alignment explanation
Indices: 96855--96950 Score: 124
Period size: 51 Copynumber: 2.0 Consensus size: 47
96845 GAGCAGCAGC
* *
96855 CTCCCTCTCCCTATACATCCGAGCAGTCTCAGCCTCCCTCTCCCTCTCCCT
1 CTCCCTCTCCCTATACATCCGAACAGCCTCAG---CCCTCT-CCTCTCCCT
96906 CTCCCTCTCCCTATACATCCGAACAGCCTCAG-CCTCT-CTCTCCCT
1 CTCCCTCTCCCTATACATCCGAACAGCCTCAGCCCTCTCCTCTCCCT
96951 TTGCAACTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
45 8 0.19
47 5 0.12
51 30 0.70
ACGTcount: A:0.14, C:0.52, G:0.07, T:0.27
Consensus pattern (47 bp):
CTCCCTCTCCCTATACATCCGAACAGCCTCAGCCCTCTCCTCTCCCT
Found at i:97544 original size:19 final size:19
Alignment explanation
Indices: 97520--97558 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
97510 CATGATGTTC
97520 TTGAAGAAGTTTAGAGAGT
1 TTGAAGAAGTTTAGAGAGT
*
97539 TTGAAGAAGTTTTGAGAGT
1 TTGAAGAAGTTTAGAGAGT
97558 T
1 T
97559 AGAAAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (19 bp):
TTGAAGAAGTTTAGAGAGT
Found at i:101615 original size:13 final size:13
Alignment explanation
Indices: 101597--101621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101587 GAAAGGAATC
101597 TCATCTCATCTGA
1 TCATCTCATCTGA
101610 TCATCTCATCTG
1 TCATCTCATCTG
101622 CCATGGCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.08, T:0.40
Consensus pattern (13 bp):
TCATCTCATCTGA
Found at i:104861 original size:18 final size:18
Alignment explanation
Indices: 104840--104877 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
104830 ACAGTGCATC
* *
104840 AAAGGAATCCTAGTTACA
1 AAAGGAATCCAAGATACA
104858 AAAGGAATCCAAGATACA
1 AAAGGAATCCAAGATACA
104876 AA
1 AA
104878 GACAGTAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (18 bp):
AAAGGAATCCAAGATACA
Found at i:113707 original size:14 final size:14
Alignment explanation
Indices: 113688--113717 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
113678 AATGACTACT
113688 CATTTCATAAATTA
1 CATTTCATAAATTA
113702 CATTTCATAAATTA
1 CATTTCATAAATTA
113716 CA
1 CA
113718 AGTTGATCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (14 bp):
CATTTCATAAATTA
Found at i:114522 original size:12 final size:12
Alignment explanation
Indices: 114505--114535 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
114495 TAATATTTAG
114505 TATATATTAGTA
1 TATATATTAGTA
114517 TATATATTAGTA
1 TATATATTAGTA
114529 TATATAT
1 TATATAT
114536 CTATATCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (12 bp):
TATATATTAGTA
Found at i:114874 original size:24 final size:24
Alignment explanation
Indices: 114842--114887 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
114832 AATACTTACA
114842 TTAATTAAATTCTTAGGTATTTTT
1 TTAATTAAATTCTTAGGTATTTTT
114866 TTAATTAAATTCTTAGGTATTT
1 TTAATTAAATTCTTAGGTATTT
114888 GTGTAAACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (24 bp):
TTAATTAAATTCTTAGGTATTTTT
Found at i:115198 original size:23 final size:24
Alignment explanation
Indices: 115171--115220 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
115161 TTGATATATA
115171 AATCGGATCTTTAATATC-TTTAT
1 AATCGGATCTTTAATATCTTTTAT
115194 AATCGGATCTTTAATATCTTTTAT
1 AATCGGATCTTTAATATCTTTTAT
115218 AAT
1 AAT
115221 TTAATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (24 bp):
AATCGGATCTTTAATATCTTTTAT
Found at i:115915 original size:36 final size:36
Alignment explanation
Indices: 115868--115937 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
115858 GAGATTTTGG
* *
115868 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
1 AGAAATATGATAACCAAAATCACAAAAAATGTAATA
*
115904 AGAAATATGATAACCAAAATCACAAAAGATGTAA
1 AGAAATATGATAACCAAAATCACAAAAAATGTAA
115938 GGTTATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.60, C:0.09, G:0.10, T:0.21
Consensus pattern (36 bp):
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Found at i:122606 original size:30 final size:30
Alignment explanation
Indices: 122555--122627 Score: 123
Period size: 29 Copynumber: 2.5 Consensus size: 30
122545 GAATTTGTTC
122555 TCCTTTATTTATATA-TTTTTTTGATAATA
1 TCCTTTATTTATATATTTTTTTTGATAATA
122584 TCCTTTATTTATATATTTTTTTTTGATAATA
1 TCCTTTATTTATATA-TTTTTTTTGATAATA
122615 -CCTTTATTTATAT
1 TCCTTTATTTATAT
122628 TTAAAGTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
29 15 0.36
30 13 0.31
31 14 0.33
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (30 bp):
TCCTTTATTTATATATTTTTTTTGATAATA
Found at i:131780 original size:30 final size:30
Alignment explanation
Indices: 131744--131805 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
131734 GTTAATAAGC
131744 CATTAAAATTTGAGGGTATAAGAGAAAAGT
1 CATTAAAATTTGAGGGTATAAGAGAAAAGT
*
131774 CATTAAAATTTGAGGGTATAAGAGGAAAGT
1 CATTAAAATTTGAGGGTATAAGAGAAAAGT
131804 CA
1 CA
131806 ATATAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.45, C:0.05, G:0.24, T:0.26
Consensus pattern (30 bp):
CATTAAAATTTGAGGGTATAAGAGAAAAGT
Found at i:139754 original size:27 final size:27
Alignment explanation
Indices: 139722--139786 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
139712 CCTTTCTGCC
* *
139722 CAAGGAGCCAACTAATGTCATTCCACT
1 CAAGGAGCCAACCAATGGCATTCCACT
* *
139749 CCAGGAACCAACCAATGGCATTCCACT
1 CAAGGAGCCAACCAATGGCATTCCACT
*
139776 GAAGGAGCCAA
1 CAAGGAGCCAA
139787 AGCAAGAAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.31, G:0.18, T:0.15
Consensus pattern (27 bp):
CAAGGAGCCAACCAATGGCATTCCACT
Done.