Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016545.1 Corchorus olitorius cultivar O-4 contig16578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40206

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--47
2
20.5
2
100
0
82
51
0
0
48
1.00
7626--7687
25
2.6
24
87
5
81
59
4
6
29
1.43
8457--8694
93
2.5
93
93
6
386
50
2
10
36
1.49
8810--8841
11
2.9
11
95
0
55
46
0
9
43
1.35
13153--13200
24
2.0
24
100
0
96
45
4
20
29
1.70
13623--13656
17
2.0
17
88
0
50
58
0
23
17
1.38
19996--20034
1
39.0
1
94
0
69
2
0
0
97
0.17
20221--20282
24
2.4
26
86
13
101
14
19
8
58
1.61
26120--26144
5
5.0
5
100
0
50
40
0
0
60
0.97

Tables:   1

The End!