Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016546.1 Corchorus olitorius cultivar O-4 contig16579, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50733

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
188--488
159
1.9
160
91
0
496
32
15
17
34
1.92
5636--5884
43
5.8
42
83
10
306
42
24
10
22
1.85
5636--5885
86
2.9
86
92
5
393
42
24
10
22
1.85
5632--5887
129
2.0
131
89
3
401
42
25
10
22
1.85
22126--22173
2
25.0
2
83
8
64
50
4
0
45
1.21
23409--23446
18
2.1
19
90
5
60
23
21
31
23
1.98
36944--37144
42
4.8
42
78
2
161
26
28
22
22
1.99
47634--47709
40
1.9
40
100
0
152
42
15
11
30
1.83
49790--49830
22
1.9
21
85
5
55
36
4
2
56
1.34

Tables:   1

The End!