Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016547.1 Corchorus olitorius cultivar O-4 contig16580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80273

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
501--541
21
1.9
22
85
5
57
9
17
29
43
1.80
1848--1876
15
1.9
15
100
0
58
44
20
34
0
1.52
12633--12792
84
1.9
84
82
5
198
21
38
11
28
1.88
15119--15161
22
2.0
21
86
4
59
18
2
32
46
1.62
28316--28352
19
1.9
19
94
0
65
29
18
13
37
1.90
36387--38042
738
2.2
738
89
2
2505
40
16
15
26
1.89
38036--38081
2
23.0
2
79
16
51
45
0
6
47
1.28
38033--38081
16
3.1
16
85
11
66
46
0
6
46
1.27
38036--38081
22
2.1
22
84
8
58
45
0
6
47
1.28
39329--39362
2
17.0
2
100
0
68
50
0
0
50
1.00
41657--41691
11
3.2
11
83
0
52
77
8
5
8
1.13
44995--45057
28
2.2
28
78
13
67
69
6
6
17
1.31
78791--78877
21
4.2
21
84
12
119
24
9
25
41
1.84
78826--78888
18
3.3
18
79
12
72
25
7
26
39
1.83
78800--78888
39
2.3
39
92
2
151
25
8
25
39
1.85
78617--79076
235
2.0
234
88
1
679
27
10
23
38
1.87
79044--79272
71
3.2
70
86
4
296
22
12
20
44
1.85
79213--79353
50
2.7
50
77
12
131
24
12
18
44
1.84

Tables:   1

The End!