Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016548.1 Corchorus olitorius cultivar O-4 contig16581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94624

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
611--677
21
3.2
21
70
16
66
50
11
5
31
1.63
598--677
42
1.9
42
94
0
142
47
12
7
32
1.69
2153--2197
2
22.5
2
100
0
90
48
0
51
0
1.00
3696--3751
6
9.3
6
100
0
112
0
16
0
83
0.64
12472--12498
3
9.0
3
100
0
54
0
33
0
66
0.92
20388--20421
16
2.1
16
94
0
59
29
8
29
32
1.87
21950--22002
11
4.8
11
75
6
54
49
0
0
50
1.00
21952--22002
19
2.7
19
80
14
70
49
0
0
50
1.00
21956--22007
16
3.1
16
78
15
61
51
0
0
48
1.00
23775--23833
29
2.0
29
90
3
91
32
20
13
33
1.91
23773--23868
31
3.2
30
80
8
97
30
20
13
35
1.91
25260--25290
2
16.0
2
93
6
55
51
0
0
48
1.00
25399--25729
43
7.8
41
84
9
409
22
10
25
41
1.85
25397--25729
84
3.9
84
92
3
535
22
10
25
41
1.85
57888--57921
11
3.1
11
91
0
50
29
0
2
67
1.05
58341--58402
31
2.0
31
100
0
124
38
16
9
35
1.81
69431--69465
18
2.1
16
89
10
52
77
0
22
0
0.78
70165--70194
13
2.3
13
94
0
51
16
13
10
60
1.59
80963--80995
15
2.1
16
88
11
50
27
3
0
69
1.03
86199--86256
31
2.0
29
83
10
73
43
1
10
44
1.48
86708--86780
30
2.5
29
91
4
112
17
38
0
43
1.50
91668--91707
16
2.6
16
85
14
50
45
7
10
37
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92050--92085
3
11.7
3
94
5
63
63
0
0
36
0.94

Tables:   1

The End!