genome.fa.s16549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016549.1 Corchorus olitorius cultivar O-4 contig16582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197447

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5713--5778	34	2.0	33	87	3	96	24	16	10	48	1.78
10467--10493	13	2.1	13	100	0	54	40	0	14	44	1.46
14335--14410	2	43.0	2	69	23	55	44	1	0	53	1.08
14336--14404	10	6.7	10	76	17	70	43	1	0	55	1.08
14336--14404	19	3.3	20	78	13	70	43	1	0	55	1.08
29213--29257	19	2.4	19	85	7	56	37	0	8	53	1.32
29650--29712	32	2.1	30	82	8	74	28	7	17	46	1.76
41674--41747	30	2.6	29	87	6	105	22	24	12	40	1.88
41874--41955	28	2.8	29	83	7	112	23	21	12	42	1.86
42017--42077	29	2.1	30	84	9	81	47	14	19	18	1.82
42761--42805	22	2.1	21	84	12	56	53	0	0	46	1.00
55435--55483	25	2.0	25	88	8	73	48	2	8	40	1.44
59439--59481	19	2.3	19	87	0	59	58	4	0	37	1.19
59660--60163	22	23.0	21	72	13	306	35	16	10	37	1.83
59660--60599	44	21.7	43	69	15	342	35	16	9	38	1.82
59897--60144	82	2.9	83	77	9	234	35	15	8	39	1.78
60398--60481	21	3.7	24	78	18	83	34	14	9	41	1.78
60244--60481	22	10.8	22	69	13	105	33	13	10	41	1.80
60535--60596	22	2.8	22	78	4	72	45	16	6	32	1.72
60701--60814	22	5.1	23	75	12	85	40	18	7	33	1.80
60708--60814	46	2.4	44	79	6	108	39	16	8	35	1.79
60701--60840	68	2.1	66	82	5	165	37	18	9	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60778--60837	22	2.8	21	82	12	68	33	13	13	40	1.83
60757--60884	70	1.9	66	83	6	166	35	17	10	36	1.85
61053--61090	19	2.0	20	85	15	53	63	2	5	28	1.30
61937--61974	19	2.1	17	90	9	58	60	0	0	39	0.97
62550--62733	89	2.1	89	92	2	307	32	19	9	38	1.84
75843--75876	8	4.1	8	88	3	50	0	17	0	82	0.67
76597--76652	21	2.9	19	78	10	60	32	23	8	35	1.86
77991--78159	83	2.0	83	100	0	338	32	13	14	40	1.84
84788--84984	99	2.0	99	95	0	358	50	9	10	29	1.68
84955--85088	67	2.0	67	95	0	241	54	8	16	20	1.68
87102--87141	5	8.4	5	79	20	50	22	17	2	57	1.52
87094--87145	13	3.8	13	79	18	61	23	17	3	55	1.58
89148--89247	44	2.3	44	80	0	110	40	13	14	33	1.84
89194--89381	22	8.5	22	75	6	166	40	11	13	34	1.81
89553--89727	22	8.1	22	74	8	135	33	13	16	36	1.87
89562--89727	64	2.6	63	75	6	147	33	13	15	37	1.86
90592--90665	38	1.9	38	91	0	121	41	2	8	47	1.47
96422--96499	29	2.7	29	74	9	86	39	29	14	16	1.88
102441--102525	41	2.1	41	84	8	111	14	11	20	54	1.71
103201--103317	38	3.1	38	75	17	143	21	5	12	59	1.54
103172--103317	76	1.9	76	98	0	283	22	8	11	57	1.60
111360--111547	59	3.3	60	64	16	162	36	20	12	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111348--111571	113	2.0	113	100	0	448	36	19	13	30	1.90
113343--113779	132	3.3	132	96	1	775	50	1	8	39	1.43
116979--117010	2	16.0	2	100	0	64	50	0	0	50	1.00
117801--117909	54	2.0	54	100	0	218	22	18	33	25	1.97
119623--120573	438	2.2	436	86	3	1270	41	13	15	30	1.85
122253--122288	10	3.6	10	84	0	54	41	19	8	30	1.81
122808--122862	17	3.2	17	73	19	60	25	12	18	43	1.85
127851--127884	16	2.3	14	90	10	50	47	0	14	38	1.45
129695--129753	2	29.5	2	89	6	93	47	0	3	49	1.18
129881--130685	101	8.0	100	84	3	925	28	23	21	27	1.99
129895--130685	202	3.9	201	86	3	1027	28	23	21	27	1.99
131065--131493	233	1.8	233	85	2	610	25	24	17	32	1.97
133017--133477	99	4.7	99	75	6	300	26	23	14	35	1.93
135079--135111	17	1.9	17	93	0	57	33	30	12	24	1.91
142424--142461	11	3.5	11	89	10	51	39	0	2	57	1.12
143021--143084	3	21.3	3	100	0	128	32	0	0	67	0.91
148870--148906	19	2.0	19	94	5	67	32	0	0	67	0.91
148876--148917	19	2.2	19	86	0	57	38	2	0	59	1.10
149710--149786	29	2.6	30	81	6	93	28	10	27	33	1.90
154162--154337	91	1.9	91	98	0	343	34	15	15	35	1.89
158208--158355	78	1.9	79	87	5	219	38	15	10	35	1.82
163334--163381	21	2.3	21	85	0	60	45	8	16	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163520--163568	21	2.3	20	83	16	64	32	2	0	65	1.04
163671--163723	20	2.7	20	81	18	58	69	1	1	26	1.09
168054--168126	27	2.7	27	97	2	137	47	12	8	31	1.70
169690--169749	30	2.0	30	87	6	86	43	6	30	20	1.77
172143--172469	178	1.8	177	86	3	469	36	13	14	35	1.86
175290--175342	27	2.0	27	88	0	79	32	7	16	43	1.76
175733--175817	3	29.7	3	78	11	81	60	0	3	36	1.14
175733--175776	20	2.2	20	96	4	81	63	0	0	36	0.95
185348--185374	14	1.9	14	100	0	54	29	0	0	70	0.88
185576--185621	21	2.4	19	82	13	58	36	4	2	56	1.31
186673--186940	131	2.1	129	87	5	380	48	1	11	38	1.49
193696--193721	12	2.2	12	100	0	52	34	7	0	57	1.27
195413--195507	45	2.2	43	85	7	131	38	21	5	34	1.76

Tables:   1

The End!