Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016552.1 Corchorus olitorius cultivar O-4 contig16585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43848

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--231
111
1.9
111
99
0
421
26
28
17
27
1.97
17930--17958
6
4.8
6
100
0
58
65
0
17
17
1.27
28468--29324
445
1.9
447
85
5
1169
31
15
11
41
1.83
29412--29460
25
2.0
25
83
0
62
28
2
14
55
1.51
32895--33005
42
2.6
42
97
0
204
18
12
28
40
1.87
33206--33242
13
2.5
15
87
12
51
10
10
5
72
1.25
37627--37926
150
2.0
150
92
1
494
31
18
19
31
1.95
38143--38212
29
2.3
31
85
9
92
17
25
8
48
1.75
42674--42716
2
21.0
2
95
4
77
48
2
0
48
1.14
42713--42936
111
2.0
111
96
0
412
40
12
8
38
1.73
43231--43646
205
2.0
204
93
1
708
36
10
8
44
1.69

Tables:   1

The End!