Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016554.1 Corchorus olitorius cultivar O-4 contig16587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174178

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1607--1706
49
2.0
49
92
1
164
32
16
10
42
1.81
8428--8467
16
2.5
16
100
0
80
37
52
0
10
1.35
8451--8771
163
2.0
159
93
4
549
46
28
4
20
1.71
10158--10204
7
7.7
6
86
13
53
2
2
17
78
0.94
10158--10204
13
3.8
12
82
17
53
2
2
17
78
0.94
10157--10196
18
2.3
17
82
4
53
2
2
17
77
0.99
13274--13335
30
2.1
30
100
0
124
30
9
27
32
1.89
15725--15798
12
6.7
11
70
26
59
43
1
1
54
1.17
15724--15803
19
4.3
20
74
14
66
45
1
1
52
1.16
15729--15789
16
4.2
14
72
13
52
42
1
1
54
1.20
15728--15803
21
3.7
21
77
16
54
43
1
1
53
1.17
21706--21744
19
1.9
19
85
10
51
48
0
38
12
1.42
31989--32098
53
2.1
53
96
0
202
31
20
11
35
1.89
33135--33177
21
2.0
22
82
13
54
0
18
4
76
0.95
33782--33885
52
2.0
52
100
0
208
30
26
19
23
1.98
40281--40449
85
2.0
84
91
1
275
41
15
15
27
1.87
41604--41651
17
2.8
17
83
0
60
39
14
18
27
1.90
51014--51072
19
3.0
20
85
5
75
37
11
18
32
1.87
51117--51153
19
1.9
19
94
0
65
40
13
29
16
1.86
63694--63735
6
6.8
6
84
12
50
88
0
9
2
0.61
63694--63738
12
3.8
12
85
5
56
86
0
11
2
0.65
71297--71333
14
2.7
14
91
4
58
40
18
10
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99950--99992
19
2.3
18
84
8
50
76
16
2
4
1.05
102223--102417
72
2.7
73
79
15
233
49
18
8
23
1.75
113110--113332
118
1.9
118
92
3
378
43
2
38
15
1.61
113366--113645
115
2.4
115
94
0
488
39
20
12
28
1.88
113549--113812
97
2.6
98
83
8
334
38
20
11
29
1.88
113424--113854
107
4.0
103
74
12
333
38
19
11
30
1.87
115581--115644
29
2.2
29
86
5
94
42
12
21
23
1.87
118161--118190
3
10.0
3
92
0
51
30
0
33
36
1.58
129556--129621
29
2.2
30
81
8
80
56
10
6
27
1.57
136228--136301
32
2.3
32
81
6
80
40
10
21
27
1.86
137052--137926
482
1.8
477
88
3
1346
36
14
11
37
1.84
138091--138149
21
2.9
21
85
5
77
37
11
18
32
1.87
138139--138197
29
2.0
29
96
0
109
40
8
25
25
1.83
138306--138349
22
2.0
22
100
0
88
54
0
4
40
1.21
147538--147738
99
2.0
99
99
0
393
36
17
21
23
1.95
152548--152581
17
2.0
17
94
0
59
50
0
0
50
1.00
155115--155700
319
1.8
315
88
5
901
31
23
14
29
1.95
173954--173993
20
2.0
20
100
0
80
35
25
20
20
1.96

Tables:   1

The End!