Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016555.1 Corchorus olitorius cultivar O-4 contig16588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92689

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4090--4158
27
2.6
27
95
0
120
40
5
8
44
1.59
4197--4257
32
1.9
32
100
0
122
29
3
16
50
1.61
11502--11526
2
12.5
2
100
0
50
52
0
0
48
1.00
12074--12153
40
2.0
40
92
0
133
41
5
18
35
1.73
20620--20648
6
5.0
6
95
4
51
68
0
0
31
0.89
23752--23802
19
2.7
19
77
14
61
50
1
0
47
1.12
24156--24180
13
1.9
13
100
0
50
56
28
0
16
1.41
38995--39043
19
2.6
20
81
12
59
53
2
0
44
1.12
52844--52870
1
27.0
1
100
0
54
100
0
0
0
0.00
53974--54004
14
2.2
14
100
0
62
25
0
32
41
1.56
55955--56007
23
2.3
23
96
0
97
11
13
20
54
1.69
64168--64192
6
4.2
6
100
0
50
0
0
36
64
0.94
65345--65386
19
2.2
19
100
0
84
33
35
14
16
1.89
67474--67523
21
2.3
21
79
6
55
38
6
22
34
1.78
67515--67569
29
1.9
29
81
3
67
36
12
10
40
1.79
67558--67617
22
2.8
21
82
10
68
45
11
8
35
1.71
67668--67697
2
15.0
2
100
0
60
50
0
0
50
1.00
72738--72767
14
2.1
15
93
6
53
3
6
0
90
0.56
73532--73671
70
2.0
69
89
6
212
39
15
18
26
1.91
79580--79639
16
3.8
16
72
12
52
53
1
40
5
1.33
82367--82519
61
2.5
59
78
10
157
35
15
16
32
1.90
84102--84383
131
2.3
124
90
9
434
45
8
12
33
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84763--84906
22
6.6
21
73
12
87
42
13
7
36
1.72
90183--90292
54
2.0
54
100
0
220
37
9
9
44
1.68
92551--92577
10
2.7
10
100
0
54
7
33
0
59
1.25

Tables:   1

The End!