Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016556.1 Corchorus olitorius cultivar O-4 contig16589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48931

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4944--4992
23
2.1
23
85
7
64
32
8
12
46
1.71
6832--6903
29
2.4
31
84
11
96
30
5
27
36
1.80
7179--7272
45
2.2
44
86
7
131
38
21
5
35
1.76
8233--8267
12
2.9
12
95
0
61
54
2
0
42
1.15
14619--14653
14
2.3
16
90
9
56
0
40
0
60
0.97
14707--14845
70
2.0
70
86
8
194
45
20
10
23
1.82
17025--17052
14
2.0
14
100
0
56
21
14
35
28
1.92
18296--18376
28
2.7
30
83
9
103
30
20
11
37
1.88
20166--20232
30
2.4
28
85
12
84
46
5
31
16
1.71
23813--23886
29
2.5
31
84
4
89
41
10
20
27
1.85
26141--26191
17
3.0
17
75
11
59
45
5
25
23
1.75
29072--29206
56
2.4
56
98
0
261
40
18
20
20
1.91
30579--30618
19
2.1
19
85
4
53
45
5
7
42
1.54
33140--33170
15
2.1
15
93
0
53
9
0
80
9
0.90
39309--39386
31
2.5
31
93
0
129
37
8
19
34
1.83
39472--39530
29
2.0
29
96
0
109
50
11
10
27
1.71
40095--40159
30
2.2
30
86
5
87
47
1
6
44
1.37
40081--40168
30
2.8
30
74
19
74
48
2
4
44
1.35
40156--40198
21
2.1
20
82
4
50
48
2
4
44
1.36
40867--40900
6
5.5
6
86
6
50
0
29
0
70
0.87
40865--40923
13
4.8
13
76
12
63
0
28
0
71
0.87
40864--40910
19
2.3
21
85
10
71
0
29
0
70
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40867--40923
24
2.3
23
85
8
69
0
28
0
71
0.86
41781--41812
16
2.0
16
100
0
64
31
6
18
43
1.75
46945--46969
13
1.9
13
100
0
50
48
4
8
40
1.51

Tables:   1

The End!