Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016561.1 Corchorus olitorius cultivar O-4 contig16594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58083

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10712--10750
14
2.9
13
80
3
51
53
2
2
41
1.28
10733--10988
122
2.0
128
88
7
389
51
2
9
36
1.47
12054--12135
41
2.0
40
88
2
119
45
17
10
26
1.81
12293--12339
14
3.8
14
69
30
52
51
8
0
40
1.33
12292--12334
22
2.0
22
100
0
86
53
9
0
37
1.33
21750--21784
5
6.8
5
93
6
61
0
17
0
82
0.66
28304--28376
21
3.6
21
68
20
57
32
5
26
35
1.79
29940--29973
3
11.3
3
100
0
68
67
0
32
0
0.91
30090--30207
57
2.1
57
90
1
182
46
16
7
28
1.75
31091--31156
33
2.0
33
82
5
80
22
28
19
28
1.98
31314--31641
164
2.0
162
94
1
568
47
9
11
31
1.72
33134--33375
124
2.0
122
92
2
405
28
13
19
38
1.89
33670--33813
68
2.0
71
88
7
213
29
18
11
40
1.85
34606--34633
2
14.0
2
100
0
56
50
50
0
0
1.00
35541--35575
18
1.9
18
88
0
52
20
2
14
62
1.43
38021--38084
30
2.3
27
89
8
92
4
20
3
71
1.17
40372--40447
35
2.2
35
92
4
127
22
14
7
55
1.65
44057--44089
2
16.5
2
93
0
57
3
0
45
51
1.16
44770--44910
74
1.9
74
84
10
189
54
4
0
40
1.25
44843--44911
20
3.5
20
76
11
63
55
1
0
43
1.08
44809--44912
25
4.1
25
71
19
81
57
4
0
37
1.20
48283--48365
43
1.9
44
95
2
150
27
0
18
54
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49804--49854
22
2.2
24
83
16
72
41
0
0
58
0.98
49804--49852
25
2.0
25
84
8
64
40
0
0
59
0.98
55895--55930
3
12.0
3
100
0
72
66
0
0
33
0.92
57316--57366
22
2.3
22
80
6
59
35
3
13
47
1.62
57354--57439
22
4.0
22
77
6
77
38
5
11
44
1.65

Tables:   1

The End!