Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016562.1 Corchorus olitorius cultivar O-4 contig16595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9785
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:9032 original size:3 final size:3

Alignment explanation


    Indices: 9026--9052  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       9016 TTTATTTTTT

                                               
       9026 TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA

       9053 AATCTGAATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Done.