Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016563.1 Corchorus olitorius cultivar O-4 contig16596, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59744

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9532--10119
224
2.7
219
88
4
878
35
20
6
36
1.80
10737--10872
65
2.1
65
90
0
209
35
30
5
28
1.79
10521--11086
286
2.0
285
89
1
875
36
22
7
32
1.84
20250--20291
20
2.0
20
86
4
57
38
19
19
23
1.93
20685--20728
11
4.0
11
88
8
54
43
0
2
54
1.12
26794--26829
18
1.9
18
88
5
54
75
2
22
0
0.94
35305--35332
4
7.0
4
100
0
56
50
25
0
25
1.50
35601--35657
29
1.9
30
89
3
89
61
14
3
21
1.47
43569--43634
3
22.0
3
80
0
51
53
4
39
3
1.37
46102--46252
80
1.9
81
84
4
207
32
12
18
36
1.88
59613--59649
19
1.9
19
88
0
56
51
0
5
43
1.24

Tables:   1

The End!