Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016564.1 Corchorus olitorius cultivar O-4 contig16597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18132

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3681--3755
28
2.7
28
75
2
80
37
13
24
25
1.91
4174--4202
15
1.9
15
100
0
58
27
20
13
37
1.91
4731--4788
23
2.6
23
83
2
82
22
34
24
18
1.96
5499--5542
22
2.0
22
86
8
63
47
0
2
50
1.13
5702--5752
25
2.1
25
85
3
68
43
9
19
27
1.82
6524--6568
24
1.9
24
95
4
83
51
4
4
40
1.42
9659--9705
21
2.2
21
85
7
60
38
25
17
19
1.92
10030--10070
21
2.0
21
85
9
57
43
21
12
21
1.85
10039--10204
52
3.1
52
87
5
224
42
19
12
25
1.86
9906--10255
183
1.9
188
81
5
435
42
21
11
24
1.86
10145--10514
74
4.9
73
85
6
431
40
21
15
22
1.91
10423--10471
21
2.3
21
86
6
64
38
26
18
16
1.91
10441--10642
54
3.7
56
83
7
252
43
20
11
25
1.85
10612--10652
21
2.0
21
95
0
73
39
19
12
29
1.88
11626--11670
20
2.4
19
85
7
65
37
6
8
46
1.61
11633--11670
20
1.9
20
94
0
67
39
7
10
42
1.69
11572--11702
69
1.9
68
96
1
244
36
4
7
51
1.51

Tables:   1

The End!