Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001657.1 Corchorus olitorius cultivar O-4 contig01657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27


Found at i:309 original size:13 final size:12

Alignment explanation


    Indices: 267--311  Score: 54
    Period size: 12  Copynumber: 3.5  Consensus size: 12

        257 CATGCACCCA

                          
        267 AAAACAATTTATTT
          1 AAAACAATTTA--T

                 *      
        281 AAAACCATTTAT
          1 AAAACAATTTAT

                         
        293 AAAACAATTTGAT
          1 AAAACAATTT-AT

                  
        306 AAAACA
          1 AAAACA

        312 GTAATAAAAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  12   10  0.36
  13    8  0.29
  14   10  0.36

ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31


Consensus pattern (12 bp):   
AAAACAATTTAT
Done.