Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016570.1 Corchorus olitorius cultivar O-4 contig16603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1669
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38


Found at i:670 original size:21 final size:21

Alignment explanation


    Indices: 633--681  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        623 TATTCTTATA

                                 
        633 TGCTACGAGCTTATTTACAGT
          1 TGCTACGAGCTTATTTACAGT

                               * 
        654 TGCTACGAGCTTATTTACATT
          1 TGCTACGAGCTTATTTACAGT

                   
        675 TGCTACG
          1 TGCTACG

        682 GACATTATCT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39


Consensus pattern (21 bp):   
TGCTACGAGCTTATTTACAGT
Done.