Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016572.1 Corchorus olitorius cultivar O-4 contig16605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147681

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
911--1161
130
1.9
131
88
3
382
50
2
9
37
1.47
2055--2093
14
2.9
13
80
3
51
53
2
2
41
1.28
4237--4278
19
2.2
19
83
8
50
26
9
0
64
1.24
10872--10956
20
4.1
20
77
6
80
44
23
27
4
1.73
10892--10952
29
2.1
28
85
8
79
44
24
27
3
1.69
10978--11049
28
2.6
28
84
4
92
44
19
26
9
1.81
11209--11244
13
2.7
14
87
12
58
50
22
13
13
1.77
12481--12519
2
19.5
2
100
0
78
51
0
0
48
1.00
13093--13164
37
1.9
37
97
0
135
34
13
8
43
1.75
20019--20053
3
11.7
3
100
0
70
68
0
31
0
0.90
23362--23390
2
15.0
2
92
7
51
51
0
0
48
1.00
23365--23392
13
2.2
13
100
0
56
53
0
0
46
1.00
37480--37535
15
3.7
15
95
0
103
7
12
58
21
1.57
38668--38756
25
3.6
25
80
7
101
57
7
13
21
1.61
39767--39826
15
4.0
15
86
0
75
23
25
28
23
2.00
39832--39872
18
2.3
18
100
0
82
24
41
21
12
1.87
40596--40674
35
2.3
35
100
0
158
50
22
11
15
1.75
45351--45413
30
2.1
30
100
0
126
34
12
22
30
1.91
50212--50236
7
3.6
7
100
0
50
88
0
0
12
0.53
57389--57431
22
2.0
22
95
0
77
37
6
18
37
1.78
62558--62582
6
4.2
6
100
0
50
0
32
0
68
0.90
68212--68306
44
2.1
45
88
3
138
46
18
9
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73593--73642
24
2.1
24
88
0
73
60
8
26
6
1.48
73410--73799
211
1.9
204
87
5
568
52
14
15
17
1.76
74990--75016
7
3.9
7
100
0
54
29
14
40
14
1.86
78798--78881
44
2.0
42
88
4
123
52
3
8
35
1.49
78923--78970
24
2.0
24
95
0
87
41
10
8
39
1.69
90602--90657
21
2.8
20
81
5
69
35
10
19
33
1.87
98085--98277
97
2.0
95
93
2
332
30
16
18
34
1.93
98746--98903
77
2.0
78
95
1
282
34
22
17
25
1.95
103223--103361
62
2.3
59
85
5
170
43
11
8
35
1.72
110754--110829
30
2.6
30
87
2
109
39
15
26
18
1.91
124896--124972
29
2.6
30
81
10
95
18
24
12
44
1.85
125017--125096
32
2.5
32
89
2
126
22
26
22
28
1.99
143288--143406
32
3.8
31
83
7
118
49
16
7
26
1.72
144916--144945
15
2.1
14
93
6
51
33
0
0
66
0.92
145177--145203
14
1.9
14
100
0
54
0
18
0
81
0.69
146961--146987
3
9.0
3
100
0
54
66
0
33
0
0.92
147103--147154
10
4.9
10
75
13
50
80
1
11
5
0.96
147303--147367
27
2.3
29
76
7
71
35
21
9
33
1.85

Tables:   1

The End!