Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016573.1 Corchorus olitorius cultivar O-4 contig16606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32


Found at i:25 original size:15 final size:14

Alignment explanation


    Indices: 5--34  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

          1 TCAA

                           
          5 TAAAATAAAATATAT
          1 TAAAATAAAA-ATAT

                          
         20 TAAAATAAAAATAT
          1 TAAAATAAAAATAT

             
         34 T
          1 T

         35 TATTTTTTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.33
  15   10  0.67

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (14 bp):   
TAAAATAAAAATAT
Done.