Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016575.1 Corchorus olitorius cultivar O-4 contig16608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75785

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109--160
25
2.1
24
85
3
68
28
5
3
61
1.37
415--448
17
2.0
17
94
0
59
44
5
0
50
1.26
4951--4998
25
2.0
24
84
12
62
37
14
29
18
1.91
9605--9759
78
2.0
78
93
0
265
34
14
1
49
1.54
10663--10695
17
1.9
17
88
11
50
60
0
0
39
0.97
12491--12555
15
4.3
15
76
13
62
53
4
0
41
1.21
18177--18247
29
2.4
31
84
11
96
29
23
12
33
1.92
18872--19165
22
13.5
22
70
4
119
37
11
14
36
1.82
19015--19165
65
2.3
65
80
5
162
38
11
11
38
1.78
24306--24353
21
2.2
22
81
3
62
50
4
0
45
1.21
27705--27734
2
15.0
2
92
0
51
53
0
0
46
1.00
60561--60643
42
2.0
42
90
4
132
44
15
7
32
1.74
71549--71611
2
29.5
2
81
12
72
46
4
4
44
1.45
71549--71611
24
2.6
24
94
0
108
46
4
4
44
1.45

Tables:   1

The End!