Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016576.1 Corchorus olitorius cultivar O-4 contig16609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55855

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2120--2168
22
2.2
22
96
0
89
26
10
38
24
1.87
13383--13417
16
2.2
16
94
0
61
37
0
40
22
1.55
17221--17245
13
1.9
13
100
0
50
52
0
32
16
1.44
22300--22456
78
2.0
78
80
2
172
36
18
17
26
1.93
22316--22480
78
2.1
78
78
4
172
35
20
18
26
1.95
26241--26308
31
2.2
31
86
5
93
35
14
19
30
1.92
31749--32262
30
16.7
30
82
4
551
32
17
16
32
1.93
31749--32262
60
8.4
62
88
2
612
32
17
16
32
1.93
31749--32265
247
2.1
245
94
0
908
32
17
16
33
1.93
34313--34376
33
1.9
33
83
0
83
32
23
20
23
1.98
36048--36361
126
2.6
123
80
11
351
24
20
18
36
1.94
46595--46658
21
3.2
20
76
13
60
42
14
14
29
1.84
53339--53368
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!