Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016578.1 Corchorus olitorius cultivar O-4 contig16611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26592

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--311
121
1.9
120
95
2
407
59
8
8
24
1.53
276--379
34
3.1
34
97
1
192
61
1
14
22
1.43
589--814
121
1.9
121
99
0
443
58
7
7
25
1.53
779--852
34
2.2
34
97
2
141
60
2
13
22
1.45
6288--6329
21
2.0
21
90
0
66
23
38
9
28
1.86
6622--6680
29
2.1
29
93
3
102
55
15
6
22
1.63
7095--7312
110
2.0
111
97
0
411
50
21
5
22
1.70
14631--14957
159
2.0
162
87
5
473
40
10
1
46
1.48
15992--16032
21
1.9
22
85
5
57
9
14
29
46
1.77

Tables:   1

The End!